hyperspy.tests.io package¶

Submodules¶

hyperspy.tests.io.generate_dm_testing_files module¶

Creates Digital Micrograph scripts to generate the dm3 testing files

hyperspy.tests.io.generate_dm_testing_files.generate_1D_files(f, data_types, dmversion)¶

hyperspy.tests.io.generate_dm_testing_files.generate_2D_files(f, data_types, dmversion)¶

hyperspy.tests.io.generate_dm_testing_files.generate_3D_files(f, data_types, dmversion)¶

hyperspy.tests.io.generate_dm_testing_files.generate_4D_files(f, data_types, dmversion)¶

hyperspy.tests.io.test_bcf module¶

hyperspy.tests.io.test_bcf.test_fast_bcf()¶

hyperspy.tests.io.test_bcf.test_hyperspy_wrap()¶

hyperspy.tests.io.test_bcf.test_hyperspy_wrap_downsampled()¶

hyperspy.tests.io.test_bcf.test_load_16bit()¶

hyperspy.tests.io.test_bcf.test_load_16bit_reduced()¶

hyperspy.tests.io.test_bcf.test_load_8bit()¶

hyperspy.tests.io.test_blockfile module¶

hyperspy.tests.io.test_blockfile.test_crop_notes()¶

hyperspy.tests.io.test_blockfile.test_default_header()¶

hyperspy.tests.io.test_blockfile.test_different_x_y_scale_units()¶

hyperspy.tests.io.test_blockfile.test_load1()¶

hyperspy.tests.io.test_blockfile.test_load2()¶

hyperspy.tests.io.test_blockfile.test_load_inplace()¶

hyperspy.tests.io.test_blockfile.test_load_memmap()¶

hyperspy.tests.io.test_blockfile.test_load_readonly()¶

hyperspy.tests.io.test_blockfile.test_load_to_memory()¶

hyperspy.tests.io.test_blockfile.test_non_square()¶

hyperspy.tests.io.test_blockfile.test_save_load_cycle()¶

hyperspy.tests.io.test_blockfile.test_write_cutoff()¶

hyperspy.tests.io.test_blockfile.test_write_data_am_mismatch()¶

hyperspy.tests.io.test_blockfile.test_write_data_line()¶

hyperspy.tests.io.test_blockfile.test_write_data_single()¶

hyperspy.tests.io.test_blockfile.test_write_fresh()¶

hyperspy.tests.io.test_dens module¶

hyperspy.tests.io.test_dens.test_read1()¶

hyperspy.tests.io.test_dens.test_read2(*arg, **kw)¶

hyperspy.tests.io.test_dens.test_read3(*arg, **kw)¶

hyperspy.tests.io.test_dm3 module¶

hyperspy.tests.io.test_dm3.check_content(dat1, dat2, subfolder, key)¶

hyperspy.tests.io.test_dm3.check_dtype(d1, d2, i)¶

hyperspy.tests.io.test_dm3.check_load(filename, subfolder, key)¶

hyperspy.tests.io.test_dm3.test_content()¶

hyperspy.tests.io.test_dm3.test_dtypes()¶

hyperspy.tests.io.test_dm3.test_loading()¶

hyperspy.tests.io.test_dm4 module¶

hyperspy.tests.io.test_dm4.check_content(dat1, dat2, subfolder, key)¶

hyperspy.tests.io.test_dm4.check_dtype(d1, d2, i)¶

hyperspy.tests.io.test_dm4.check_load(filename, subfolder, key)¶

hyperspy.tests.io.test_dm4.test_content()¶

hyperspy.tests.io.test_dm4.test_dtypes()¶

hyperspy.tests.io.test_dm4.test_loading()¶

hyperspy.tests.io.test_dm_stackbuilder_plugin module¶

class hyperspy.tests.io.test_dm_stackbuilder_plugin.TestStackBuilder¶

Bases: object

test_load_stackbuilder_imagestack()¶

hyperspy.tests.io.test_emd module¶

class hyperspy.tests.io.test_emd.TestCaseSaveAndRead¶

Bases: object

tearDown()¶

test_save_and_read()¶

hyperspy.tests.io.test_emd.test_image_2d_loading()¶

hyperspy.tests.io.test_emd.test_metadata()¶

hyperspy.tests.io.test_emd.test_signal_3d_loading()¶

hyperspy.tests.io.test_emd.test_spectrum_1d_loading()¶

hyperspy.tests.io.test_fei module¶

class hyperspy.tests.io.test_fei.TestFEIReader¶

Bases: object

setUp()¶

test_guess_units_from_mode()¶

test_load_acquire()¶

test_load_diffraction_area_scan()¶

test_load_diffraction_line_scan()¶

test_load_diffraction_point()¶

test_load_emi_old_new_format()¶

test_load_image_content()¶

test_load_search()¶

test_load_ser_reader_old_new_format()¶

test_load_spectrum_area_scan()¶

test_load_spectrum_area_scan_not_square()¶

test_load_spectrum_line_scan()¶

test_load_spectrum_point()¶

test_load_stack_image_preview()¶

test_load_units_scale()¶

test_read_STEM_TEM_mode()¶

hyperspy.tests.io.test_hdf5 module¶

class hyperspy.tests.io.test_hdf5.Example1¶

Bases: object

test_data()¶

test_original_metadata()¶

class hyperspy.tests.io.test_hdf5.TestAxesConfiguration¶

Bases: object

setUp()¶

tearDown()¶

test_axes_configuration()¶

class hyperspy.tests.io.test_hdf5.TestExample1_10¶

Bases: hyperspy.tests.io.test_hdf5.Example1

setUp()¶

class hyperspy.tests.io.test_hdf5.TestExample1_11¶

Bases: hyperspy.tests.io.test_hdf5.Example1

setUp()¶

class hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata¶

Bases: object

setUp()¶

test_binary_string()¶

test_empty_things()¶

test_inside_things()¶

test_signal_inside()¶

test_simple_things()¶

class hyperspy.tests.io.test_hdf5.TestLoadingOOMReadOnly¶

Bases: object

setUp()¶

tearDown()¶

test_oom_loading()¶

class hyperspy.tests.io.test_hdf5.TestPassingArgs¶

Bases: object

setUp()¶

tearDown()¶

test_compression_opts()¶

class hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers¶

Bases: object

setUp()¶

tearDown()¶

test_general_type_not_working()¶

test_numpy_general_type()¶

test_numpy_only_inner_lists()¶

test_save_long_list(*arg, **kw)¶

test_save_unicode()¶

test_unsupported_type()¶

hyperspy.tests.io.test_hdf5.test_none_metadata()¶

hyperspy.tests.io.test_hdf5.test_rgba16()¶

hyperspy.tests.io.test_hdf5.test_strings_from_py2()¶

hyperspy.tests.io.test_msa module¶

class hyperspy.tests.io.test_msa.TestExample1¶

Bases: object

setUp()¶

test_data()¶

test_parameters()¶

class hyperspy.tests.io.test_msa.TestExample2¶

Bases: object

setUp()¶

test_data()¶

test_parameters()¶

hyperspy.tests.io.test_ripple module¶

hyperspy.tests.io.test_ripple.generate_files()¶

Generate the test files that are distributed with HyperSpy.

Unless new features are introduced there shouldn’t be any need to recreate the files.

hyperspy.tests.io.test_ripple.test_ripple()¶

hyperspy.tests.io.test_semper_unf module¶

class hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadByte¶

Bases: object

tearDown()¶

test_save_and_read()¶

class hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadImage¶

Bases: object

tearDown()¶

test_save_and_read()¶

hyperspy.tests.io.test_semper_unf.test_image_2d_loading()¶

hyperspy.tests.io.test_semper_unf.test_image_byte_loading()¶

hyperspy.tests.io.test_semper_unf.test_image_complex_loading()¶

hyperspy.tests.io.test_semper_unf.test_image_int16_loading()¶

hyperspy.tests.io.test_semper_unf.test_image_int32_loading()¶

hyperspy.tests.io.test_semper_unf.test_no_label_loading()¶

hyperspy.tests.io.test_semper_unf.test_signal_3d_loading()¶

hyperspy.tests.io.test_semper_unf.test_spectrum_1d_loading()¶

hyperspy.tests.io.test_semper_unf.test_with_title_loading()¶

hyperspy.tests.io.test_tiff module¶

hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata()¶

hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata2()¶

hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata3()¶

hyperspy.tests.io.test_tiff.test_read_FEI_SEM_scale_metadata_16bits()¶

hyperspy.tests.io.test_tiff.test_read_FEI_SEM_scale_metadata_8bits()¶

hyperspy.tests.io.test_tiff.test_read_RGB_Zeiss_optical_scale_metadata()¶

hyperspy.tests.io.test_tiff.test_read_Zeiss_SEM_scale_metadata_1k_image()¶

hyperspy.tests.io.test_tiff.test_read_Zeiss_SEM_scale_metadata_512_image()¶

hyperspy.tests.io.test_tiff.test_read_unit_from_DM_stack(import_local_tifffile=False)¶

hyperspy.tests.io.test_tiff.test_read_unit_from_dm()¶

Use skimage tifffile.py library

hyperspy.tests.io.test_tiff.test_read_unit_from_dm_local_tifffile()¶

Use local tifffile.py library

hyperspy.tests.io.test_tiff.test_read_unit_from_imagej()¶

Use skimage tifffile.py library

hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_local_tifffile()¶

Use local tifffile.py library

hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_no_scale(import_local_tifffile=False)¶

hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_stack(import_local_tifffile=False)¶

hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_stack_no_scale(import_local_tifffile=False)¶

hyperspy.tests.io.test_tiff.test_read_unit_um()¶

hyperspy.tests.io.test_tiff.test_rgba16()¶

Use skimage tifffile.py library

hyperspy.tests.io.test_tiff.test_rgba16_local_tifffile()¶

Use local tifffile.py library

hyperspy.tests.io.test_tiff.test_saving_loading_stack_no_scale()¶

hyperspy.tests.io.test_tiff.test_saving_with_custom_tag()¶

hyperspy.tests.io.test_tiff.test_write_read_unit_imagej(import_local_tifffile=True)¶

hyperspy.tests.io.test_tiff.test_write_read_unit_imagej_with_description(import_local_tifffile=True)¶

hyperspy.tests.io.test_tiff.test_write_scale_unit()¶

hyperspy.tests.io.test_tiff.test_write_scale_unit_image_stack()¶

Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct

hyperspy.tests.io.test_tiff.test_write_scale_unit_no_export_scale()¶

hyperspy.tests.io.test_tiff.test_write_scale_unit_not_square_pixel()¶

Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct

hyperspy.tests.io.test_tiff.test_write_scale_with_um_unit()¶

Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct

hyperspy.tests.io.test_tiff.test_write_scale_with_undefined_scale()¶

Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct

hyperspy.tests.io.test_tiff.test_write_scale_with_undefined_unit()¶

Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct

Module contents¶