.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/region_of_interest/ROI_navigator.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_region_of_interest_ROI_navigator.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_region_of_interest_ROI_navigator.py:


Navigator ROI
=============

Use a RectangularROI to take the sum of an area of the navigation space.

.. GENERATED FROM PYTHON SOURCE LINES 8-11

.. code-block:: Python


    import hyperspy.api as hs








.. GENERATED FROM PYTHON SOURCE LINES 12-13

Create a signal:

.. GENERATED FROM PYTHON SOURCE LINES 13-15

.. code-block:: Python

    s = hs.data.two_gaussians()








.. GENERATED FROM PYTHON SOURCE LINES 16-17

Create the roi, here a :py:class:`~.api.roi.RectangularROI` for the two dimension navigation space:

.. GENERATED FROM PYTHON SOURCE LINES 17-19

.. code-block:: Python

    roi = hs.roi.RectangularROI()








.. GENERATED FROM PYTHON SOURCE LINES 20-26

Slice signal with roi with the ROI. By using the `interactive` function, the
output signal ``s_roi`` will update automatically.
The ROI will be added automatically on the signal figure.

By default, the ROI will be added to the navigation or signal. We specify
``recompute_out_event=None`` to avoid redundant computation when changing the ROI

.. GENERATED FROM PYTHON SOURCE LINES 26-37

.. code-block:: Python


    s.plot()
    s_roi = roi.interactive(s, recompute_out_event=None, color='C1')

    # We use :py:class:`~.interactive` function to compute the sum over the ROI interactively:

    roi_sum = hs.interactive(s_roi.sum, recompute_out_event=None)

    # Choose the second figure as gallery thumbnail:
    # sphinx_gallery_thumbnail_number = 1




.. rst-class:: sphx-glr-horizontal


    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_001.png
         :alt: Two Gaussians Navigator
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_001.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_002.png
         :alt: Two Gaussians Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_002.png
         :class: sphx-glr-multi-img





.. GENERATED FROM PYTHON SOURCE LINES 38-39

Plot the signal sliced by the ROI:

.. GENERATED FROM PYTHON SOURCE LINES 39-40

.. code-block:: Python

    roi_sum.plot()



.. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_003.png
   :alt: Two Gaussians Signal
   :srcset: /auto_examples/region_of_interest/images/sphx_glr_ROI_navigator_003.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 1.728 seconds)


.. _sphx_glr_download_auto_examples_region_of_interest_ROI_navigator.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: ROI_navigator.ipynb <ROI_navigator.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: ROI_navigator.py <ROI_navigator.py>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_