.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/region_of_interest/combine_PolygonROI.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_region_of_interest_combine_PolygonROI.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_region_of_interest_combine_PolygonROI.py:


Combine PolygonROI
==================

Combine several :class:`~.api.roi.PolygonROI`.

.. GENERATED FROM PYTHON SOURCE LINES 9-11

.. code-block:: Python

    import hyperspy.api as hs








.. GENERATED FROM PYTHON SOURCE LINES 12-13

Create a signal:

.. GENERATED FROM PYTHON SOURCE LINES 13-15

.. code-block:: Python

    s = hs.data.atomic_resolution_image()








.. GENERATED FROM PYTHON SOURCE LINES 16-17

Create the ROIs, here :class:`~.api.roi.PolygonROI`:

.. GENERATED FROM PYTHON SOURCE LINES 17-20

.. code-block:: Python

    roi = hs.roi.PolygonROI([(2, 4.5), (4.5, 4.5), (4.5, 2), (3.5, 3.5)])
    roi2 = hs.roi.PolygonROI([(0.5, 0.5), (1.2, 0.2), (1.5, 1), (0.2, 1.4)])








.. GENERATED FROM PYTHON SOURCE LINES 21-22

We plot the signal add the ROIs to the figure using :meth:`~hyperspy.roi.BaseInteractiveROI.add_widget`.

.. GENERATED FROM PYTHON SOURCE LINES 22-28

.. code-block:: Python


    s.plot()
    roi.add_widget(s, axes=s.axes_manager.signal_axes)
    roi2.add_widget(s, axes=s.axes_manager.signal_axes)





.. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_001.png
   :alt:  Signal
   :srcset: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <hyperspy.drawing._widgets.polygon.PolygonWidget object at 0x7ff3dfa31910>



.. GENERATED FROM PYTHON SOURCE LINES 29-31

Now that we have two ROIs, ``roi`` and ``roi2``, we can combine them to slice a signal 
by using the following function:

.. GENERATED FROM PYTHON SOURCE LINES 31-35

.. code-block:: Python


    s_roi_combined = hs.roi.combine_rois(s, [roi, roi2])
    s_roi_combined.plot()




.. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_002.png
   :alt:  Signal
   :srcset: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_002.png
   :class: sphx-glr-single-img





.. GENERATED FROM PYTHON SOURCE LINES 36-39

It is also possible to get a boolean mask from the ROIs, which can be useful for
interacting with other libraries. You need to supply the signal's ``axes_manager``
to get the correct parameters for creating the mask:

.. GENERATED FROM PYTHON SOURCE LINES 39-42

.. code-block:: Python


    boolean_mask = hs.roi.mask_from_rois([roi, roi2], s.axes_manager)
    boolean_mask = hs.signals.Signal2D(boolean_mask)
    boolean_mask.plot()


.. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_003.png
   :alt:  Signal
   :srcset: /auto_examples/region_of_interest/images/sphx_glr_combine_PolygonROI_003.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 1.653 seconds)


.. _sphx_glr_download_auto_examples_region_of_interest_combine_PolygonROI.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: combine_PolygonROI.ipynb <combine_PolygonROI.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: combine_PolygonROI.py <combine_PolygonROI.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: combine_PolygonROI.zip <combine_PolygonROI.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_