.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/region_of_interest/map_signal.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_region_of_interest_map_signal.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_region_of_interest_map_signal.py:


Create Map from ROI in signal space
===================================

Use the :func:`~.api.plot.plot_roi_map` function to create interactive maps defined
from ROIs in signal space.

.. GENERATED FROM PYTHON SOURCE LINES 9-12

.. code-block:: Python


    import hyperspy.api as hs








.. GENERATED FROM PYTHON SOURCE LINES 13-14

Create a signal:

.. GENERATED FROM PYTHON SOURCE LINES 14-16

.. code-block:: Python

    s = hs.data.two_gaussians()








.. GENERATED FROM PYTHON SOURCE LINES 17-19

Add 2 ROIs in signal space and map the corresponding signal using :func:`~.api.plot.plot_roi_map`
The ROIs are added to the plot of the signal:

.. GENERATED FROM PYTHON SOURCE LINES 19-22

.. code-block:: Python

    s.plot()
    roi = hs.plot.plot_roi_map(s, rois=2)




.. rst-class:: sphx-glr-horizontal


    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_001.png
         :alt: Two Gaussians Navigator
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_001.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_002.png
         :alt: Two Gaussians Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_002.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_003.png
         :alt: Integrated intensity Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_003.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_004.png
         :alt: Integrated intensity Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_004.png
         :class: sphx-glr-multi-img





.. GENERATED FROM PYTHON SOURCE LINES 23-24

Same as above, but plotting the maps in a single figure:

.. GENERATED FROM PYTHON SOURCE LINES 24-29

.. code-block:: Python

    s.plot()
    roi = hs.plot.plot_roi_map(s, rois=2, single_figure=True)
    # Choose this figure as gallery thumbnail:
    # sphinx_gallery_thumbnail_number = 7




.. rst-class:: sphx-glr-horizontal


    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_005.png
         :alt: Two Gaussians Navigator
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_005.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_006.png
         :alt: Two Gaussians Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_006.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_007.png
         :alt: map signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_007.png
         :class: sphx-glr-multi-img





.. GENERATED FROM PYTHON SOURCE LINES 30-31

Same as in previous step, but additionally specifying ``cmap`` and ``colors``:

.. GENERATED FROM PYTHON SOURCE LINES 31-33

.. code-block:: Python

    s.plot()
    roi = hs.plot.plot_roi_map(s, rois=2, color=["r", "b"], cmap="gray", single_figure=True)



.. rst-class:: sphx-glr-horizontal


    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_008.png
         :alt: Two Gaussians Navigator
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_008.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_009.png
         :alt: Two Gaussians Signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_009.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/region_of_interest/images/sphx_glr_map_signal_010.png
         :alt: map signal
         :srcset: /auto_examples/region_of_interest/images/sphx_glr_map_signal_010.png
         :class: sphx-glr-multi-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 5.049 seconds)


.. _sphx_glr_download_auto_examples_region_of_interest_map_signal.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: map_signal.ipynb <map_signal.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: map_signal.py <map_signal.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: map_signal.zip <map_signal.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_