hyperspy.tests.io package¶
Submodules¶
hyperspy.tests.io.generate_dm_testing_files module¶
Creates Digital Micrograph scripts to generate the dm3 testing files
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hyperspy.tests.io.generate_dm_testing_files.generate_1D_files(f, data_types, dmversion)¶
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hyperspy.tests.io.generate_dm_testing_files.generate_2D_files(f, data_types, dmversion)¶
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hyperspy.tests.io.generate_dm_testing_files.generate_3D_files(f, data_types, dmversion)¶
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hyperspy.tests.io.generate_dm_testing_files.generate_4D_files(f, data_types, dmversion)¶
hyperspy.tests.io.test_bcf module¶
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hyperspy.tests.io.test_bcf.test_fast_bcf()¶
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hyperspy.tests.io.test_bcf.test_get_mode()¶
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hyperspy.tests.io.test_bcf.test_hyperspy_wrap()¶
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hyperspy.tests.io.test_bcf.test_hyperspy_wrap_downsampled()¶
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hyperspy.tests.io.test_bcf.test_load_16bit()¶
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hyperspy.tests.io.test_bcf.test_load_16bit_reduced()¶
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hyperspy.tests.io.test_bcf.test_load_8bit()¶
hyperspy.tests.io.test_blockfile module¶
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hyperspy.tests.io.test_blockfile.test_crop_notes()¶
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hyperspy.tests.io.test_blockfile.test_default_header()¶
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hyperspy.tests.io.test_blockfile.test_different_x_y_scale_units()¶
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hyperspy.tests.io.test_blockfile.test_load1()¶
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hyperspy.tests.io.test_blockfile.test_load2()¶
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hyperspy.tests.io.test_blockfile.test_load_inplace()¶
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hyperspy.tests.io.test_blockfile.test_load_memmap()¶
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hyperspy.tests.io.test_blockfile.test_load_readonly()¶
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hyperspy.tests.io.test_blockfile.test_load_to_memory()¶
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hyperspy.tests.io.test_blockfile.test_non_square()¶
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hyperspy.tests.io.test_blockfile.test_save_load_cycle()¶
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hyperspy.tests.io.test_blockfile.test_write_cutoff()¶
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hyperspy.tests.io.test_blockfile.test_write_data_am_mismatch()¶
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hyperspy.tests.io.test_blockfile.test_write_data_line()¶
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hyperspy.tests.io.test_blockfile.test_write_data_single()¶
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hyperspy.tests.io.test_blockfile.test_write_fresh()¶
hyperspy.tests.io.test_dens module¶
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hyperspy.tests.io.test_dens.test_read1()¶
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hyperspy.tests.io.test_dens.test_read2(*arg, **kw)¶
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hyperspy.tests.io.test_dens.test_read3(*arg, **kw)¶
hyperspy.tests.io.test_dm3 module¶
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hyperspy.tests.io.test_dm3.check_content(dat1, dat2, subfolder, key)¶
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hyperspy.tests.io.test_dm3.check_dtype(d1, d2, i)¶
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hyperspy.tests.io.test_dm3.check_load(filename, subfolder, key)¶
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hyperspy.tests.io.test_dm3.test_content()¶
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hyperspy.tests.io.test_dm3.test_dtypes()¶
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hyperspy.tests.io.test_dm3.test_loading()¶
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hyperspy.tests.io.test_dm3.test_read_Diffraction_metadata()¶
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hyperspy.tests.io.test_dm3.test_read_EDS_metadata()¶
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hyperspy.tests.io.test_dm3.test_read_EELS_metadata()¶
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hyperspy.tests.io.test_dm3.test_read_STEM_metadata()¶
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hyperspy.tests.io.test_dm3.test_read_TEM_metadata()¶
hyperspy.tests.io.test_dm4 module¶
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hyperspy.tests.io.test_dm4.check_content(dat1, dat2, subfolder, key)¶
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hyperspy.tests.io.test_dm4.check_dtype(d1, d2, i)¶
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hyperspy.tests.io.test_dm4.check_load(filename, subfolder, key)¶
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hyperspy.tests.io.test_dm4.test_content()¶
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hyperspy.tests.io.test_dm4.test_dtypes()¶
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hyperspy.tests.io.test_dm4.test_loading()¶
hyperspy.tests.io.test_dm_stackbuilder_plugin module¶
hyperspy.tests.io.test_emd module¶
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class
hyperspy.tests.io.test_emd.TestCaseSaveAndRead¶ Bases:
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tearDown()¶
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test_save_and_read()¶
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hyperspy.tests.io.test_emd.test_image_2d_loading()¶
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hyperspy.tests.io.test_emd.test_metadata()¶
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hyperspy.tests.io.test_emd.test_signal_3d_loading()¶
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hyperspy.tests.io.test_emd.test_spectrum_1d_loading()¶
hyperspy.tests.io.test_fei module¶
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class
hyperspy.tests.io.test_fei.TestFEIReader¶ Bases:
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setUp()¶
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test_date_time()¶
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test_guess_units_from_mode()¶
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test_load_acquire()¶
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test_load_diffraction_area_scan()¶
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test_load_diffraction_line_scan()¶
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test_load_diffraction_point()¶
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test_load_emi_old_new_format()¶
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test_load_image_content()¶
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test_load_search()¶
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test_load_ser_reader_old_new_format()¶
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test_load_spectrum_area_scan()¶
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test_load_spectrum_area_scan_not_square()¶
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test_load_spectrum_line_scan()¶
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test_load_spectrum_point()¶
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test_load_stack_image_preview()¶
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test_load_units_scale()¶
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test_metadata_STEM()¶
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test_metadata_TEM()¶
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test_metadata_diffraction()¶
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test_read_STEM_TEM_mode()¶
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hyperspy.tests.io.test_hdf5 module¶
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class
hyperspy.tests.io.test_hdf5.TestAxesConfiguration¶ Bases:
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setUp()¶
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tearDown()¶
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test_axes_configuration()¶
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class
hyperspy.tests.io.test_hdf5.TestExample1_10¶ Bases:
hyperspy.tests.io.test_hdf5.Example1-
setUp()¶
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class
hyperspy.tests.io.test_hdf5.TestExample1_11¶ Bases:
hyperspy.tests.io.test_hdf5.Example1-
setUp()¶
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class
hyperspy.tests.io.test_hdf5.TestExample1_12¶ Bases:
hyperspy.tests.io.test_hdf5.Example1-
setUp()¶
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test_date()¶
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test_time()¶
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class
hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata¶ Bases:
object-
setUp()¶
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test_binary_string()¶
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test_empty_things()¶
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test_inside_things()¶
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test_signal_inside()¶
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test_simple_things()¶
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class
hyperspy.tests.io.test_hdf5.TestLoadingOOMReadOnly¶ Bases:
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setUp()¶
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tearDown()¶
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test_oom_loading()¶
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class
hyperspy.tests.io.test_hdf5.TestPassingArgs¶ Bases:
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setUp()¶
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tearDown()¶
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test_compression_opts()¶
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class
hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers¶ Bases:
object-
setUp()¶
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tearDown()¶
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test_date_time()¶
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test_general_metadata()¶
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test_general_type_not_working()¶
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test_numpy_general_type()¶
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test_numpy_only_inner_lists()¶
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test_quantity()¶
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test_save_long_list(*arg, **kw)¶
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test_save_unicode()¶
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test_unsupported_type()¶
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hyperspy.tests.io.test_hdf5.test_none_metadata()¶
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hyperspy.tests.io.test_hdf5.test_rgba16()¶
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hyperspy.tests.io.test_hdf5.test_strings_from_py2()¶
hyperspy.tests.io.test_msa module¶
hyperspy.tests.io.test_protochips module¶
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hyperspy.tests.io.test_protochips.create_numpy_file(filename, obj)¶
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hyperspy.tests.io.test_protochips.datetime_gas_cell()¶
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class
hyperspy.tests.io.test_protochips.test_ProtochipsElectricalCSVReader¶ Bases:
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setUp()¶
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test_read_column_name()¶
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test_read_data()¶
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test_read_start_datetime()¶
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class
hyperspy.tests.io.test_protochips.test_ProtochipsElectrothermalCSVReader¶ Bases:
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setUp()¶
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test_read_column_name()¶
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test_read_data()¶
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test_read_start_datetime()¶
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class
hyperspy.tests.io.test_protochips.test_ProtochipsGasCellCSV¶ Bases:
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setUp()¶
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test_read_metadata()¶
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test_read_original_metadata()¶
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class
hyperspy.tests.io.test_protochips.test_ProtochipsGasCellCSVReader¶ Bases:
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setUp()¶
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test_read_column_name()¶
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test_read_data()¶
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test_read_metadata_header()¶
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test_read_start_datetime()¶
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class
hyperspy.tests.io.test_protochips.test_ProtochipsThermallCSVReader¶ Bases:
object-
setUp()¶
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test_read_column_name()¶
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test_read_data()¶
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test_read_start_datetime()¶
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hyperspy.tests.io.test_protochips.test_loading_invalid_protochips_file()¶
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hyperspy.tests.io.test_protochips.test_loading_random_csv_file()¶
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hyperspy.tests.io.test_protochips.test_read_protochips_electrical()¶
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hyperspy.tests.io.test_protochips.test_read_protochips_electrothermal()¶
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hyperspy.tests.io.test_protochips.test_read_protochips_gas_cell()¶
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hyperspy.tests.io.test_protochips.test_read_protochips_thermal()¶
hyperspy.tests.io.test_ripple module¶
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hyperspy.tests.io.test_ripple.generate_files()¶ Generate the test files that are distributed with HyperSpy.
Unless new features are introduced there shouldn’t be any need to recreate the files.
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hyperspy.tests.io.test_ripple.test_ripple()¶
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hyperspy.tests.io.test_ripple.test_write_unsupported_data_shape(*arg, **kw)¶
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hyperspy.tests.io.test_ripple.test_write_unsupported_data_type(*arg, **kw)¶
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hyperspy.tests.io.test_ripple.test_write_with_metadata()¶
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hyperspy.tests.io.test_ripple.test_write_without_metadata()¶
hyperspy.tests.io.test_semper_unf module¶
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class
hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadByte¶ Bases:
object-
tearDown()¶
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test_save_and_read()¶
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class
hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadImage¶ Bases:
object-
tearDown()¶
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test_save_and_read()¶
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hyperspy.tests.io.test_semper_unf.test_image_2d_loading()¶
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hyperspy.tests.io.test_semper_unf.test_image_byte_loading()¶
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hyperspy.tests.io.test_semper_unf.test_image_complex_loading()¶
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hyperspy.tests.io.test_semper_unf.test_image_int16_loading()¶
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hyperspy.tests.io.test_semper_unf.test_image_int32_loading()¶
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hyperspy.tests.io.test_semper_unf.test_no_label_loading()¶
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hyperspy.tests.io.test_semper_unf.test_signal_3d_loading()¶
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hyperspy.tests.io.test_semper_unf.test_spectrum_1d_loading()¶
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hyperspy.tests.io.test_semper_unf.test_with_title_loading()¶
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hyperspy.tests.io.test_semper_unf.test_writing_loading_metadata()¶
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hyperspy.tests.io.test_semper_unf.test_writing_unsupported_data_type()¶
hyperspy.tests.io.test_tiff module¶
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hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata()¶
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hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata2()¶
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hyperspy.tests.io.test_tiff.test_read_BW_Zeiss_optical_scale_metadata3()¶
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hyperspy.tests.io.test_tiff.test_read_FEI_SEM_scale_metadata_16bits()¶
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hyperspy.tests.io.test_tiff.test_read_FEI_SEM_scale_metadata_8bits()¶
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hyperspy.tests.io.test_tiff.test_read_RGB_Zeiss_optical_scale_metadata()¶
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hyperspy.tests.io.test_tiff.test_read_Zeiss_SEM_scale_metadata_1k_image()¶
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hyperspy.tests.io.test_tiff.test_read_Zeiss_SEM_scale_metadata_512_image()¶
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hyperspy.tests.io.test_tiff.test_read_unit_from_DM_stack(import_local_tifffile=False)¶
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hyperspy.tests.io.test_tiff.test_read_unit_from_dm()¶ Use skimage tifffile.py library
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hyperspy.tests.io.test_tiff.test_read_unit_from_dm_local_tifffile()¶ Use local tifffile.py library
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hyperspy.tests.io.test_tiff.test_read_unit_from_imagej()¶ Use skimage tifffile.py library
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hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_local_tifffile()¶ Use local tifffile.py library
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hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_no_scale(import_local_tifffile=False)¶
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hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_stack(import_local_tifffile=False)¶
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hyperspy.tests.io.test_tiff.test_read_unit_from_imagej_stack_no_scale(import_local_tifffile=False)¶
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hyperspy.tests.io.test_tiff.test_read_unit_um()¶
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hyperspy.tests.io.test_tiff.test_rgba16()¶ Use skimage tifffile.py library
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hyperspy.tests.io.test_tiff.test_rgba16_local_tifffile()¶ Use local tifffile.py library
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hyperspy.tests.io.test_tiff.test_saving_loading_stack_no_scale()¶
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hyperspy.tests.io.test_tiff.test_saving_with_custom_tag()¶
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hyperspy.tests.io.test_tiff.test_write_read_intensity_axes_DM()¶
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hyperspy.tests.io.test_tiff.test_write_read_unit_imagej(import_local_tifffile=True)¶
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hyperspy.tests.io.test_tiff.test_write_read_unit_imagej_with_description(import_local_tifffile=True)¶
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hyperspy.tests.io.test_tiff.test_write_scale_unit()¶
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hyperspy.tests.io.test_tiff.test_write_scale_unit_image_stack()¶ Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct
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hyperspy.tests.io.test_tiff.test_write_scale_unit_no_export_scale()¶
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hyperspy.tests.io.test_tiff.test_write_scale_unit_not_square_pixel()¶ Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct
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hyperspy.tests.io.test_tiff.test_write_scale_with_um_unit()¶ Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct
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hyperspy.tests.io.test_tiff.test_write_scale_with_undefined_scale()¶ Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct
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hyperspy.tests.io.test_tiff.test_write_scale_with_undefined_unit()¶ Lazy test, still need to open the files in ImageJ or DM to check if the scale and unit are correct