hyperspy.tests.signal package¶

Submodules¶

hyperspy.tests.signal.test_1D_tools module¶

class hyperspy.tests.signal.test_1D_tools.TestAlignTools¶

Bases: object

setUp()¶

test_align()¶

test_align_expand()¶

test_estimate_shift()¶

test_shift1D()¶

class hyperspy.tests.signal.test_1D_tools.TestEstimatePeakWidth¶

Bases: object

setUp()¶

test_full_range()¶

test_too_narrow_range()¶

test_two_peaks()¶

class hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D¶

Bases: object

setUp()¶

test_height()¶

test_maxpeaksn()¶

test_n_peaks()¶

test_single_spectrum()¶

test_two_spectra()¶

test_width()¶

class hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween¶

Bases: object

setUp()¶

test_delta_float()¶

test_delta_int()¶

test_single_spectrum()¶

test_single_spectrum_in_units()¶

test_two_spectra()¶

class hyperspy.tests.signal.test_1D_tools.TestShift1D¶

Bases: object

setUp()¶

test_crop_left()¶

test_crop_right()¶

class hyperspy.tests.signal.test_1D_tools.TestSmoothing¶

Bases: object

setUp()¶

test_lowess()¶

test_savgol()¶

test_tv()¶

hyperspy.tests.signal.test_2D_tools module¶

class hyperspy.tests.signal.test_2D_tools.TestAlignTools¶

Bases: object

setUp()¶

test_align()¶

test_align_expand()¶

test_estimate_shift()¶

class hyperspy.tests.signal.test_2D_tools.TestSubPixelAlign¶

Bases: object

setUp()¶

test_align_subpix()¶

hyperspy.tests.signal.test_2D_tools.test_add_ramp()¶

hyperspy.tests.signal.test_assign_subclass module¶

class hyperspy.tests.signal.test_assign_subclass.TestConvertBaseSignal¶

Bases: object

setUp()¶

test_base_to_1d()¶

test_base_to_2d()¶

test_base_to_complex()¶

class hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal¶

Bases: object

setUp()¶

test_complex_to_complex1d()¶

test_complex_to_complex2d()¶

class hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal1D¶

Bases: object

setUp()¶

test_complex_to_dielectric_function()¶

class hyperspy.tests.signal.test_assign_subclass.TestConvertSignal1D¶

Bases: object

setUp()¶

test_signal1d_to_eds_sem()¶

test_signal1d_to_eds_tem()¶

test_signal1d_to_eels()¶

class hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass¶

Bases: object

test_complex()¶

test_complex_image()¶

test_complex_spectrum()¶

test_dielectric_function()¶

test_dielectric_function_alias()¶

test_eds_sem_spectrum()¶

test_eds_tem_spectrum()¶

test_eels_spectrum()¶

test_signal()¶

test_signal1d()¶

test_signal2d()¶

test_weird_complex()¶

test_weird_real()¶

test_weird_spectrum()¶

hyperspy.tests.signal.test_binned module¶

class hyperspy.tests.signal.test_binned.TestModelBinned¶

Bases: object

setUp()¶

test_binned()¶

test_unbinned()¶

hyperspy.tests.signal.test_binned.test_dielectric_function_binned_default()¶

hyperspy.tests.signal.test_binned.test_eds_sem_binned_default()¶

hyperspy.tests.signal.test_binned.test_eds_tem_binned_default()¶

hyperspy.tests.signal.test_binned.test_eels_spectrum_binned_default()¶

hyperspy.tests.signal.test_binned.test_image_binned_default()¶

hyperspy.tests.signal.test_binned.test_signal_binned_default()¶

hyperspy.tests.signal.test_binned.test_spectrum_binned_default()¶

hyperspy.tests.signal.test_complex_signal module¶

class hyperspy.tests.signal.test_complex_signal.TestComplexProperties¶

Bases: object

amplitude_ref = array([[ 9. , 10.04987562, 11.18033989], [ 12.36931688, 13.60147051, 14.86606875], [ 16.15549442, 17.4642492 , 18.78829423]])¶

comp_ref = array([[ 0. +9.j, 1.+10.j, 2.+11.j], [ 3.+12.j, 4.+13.j, 5.+14.j], [ 6.+15.j, 7.+16.j, 8.+17.j]])¶

imag_ref = array([[ 9, 10, 11], [12, 13, 14], [15, 16, 17]])¶

phase_ref = array([[ 1.57079633, 1.47112767, 1.39094283], [ 1.32581766, 1.2722974 , 1.22777239], [ 1.19028995, 1.15838589, 1.13095374]])¶

real_ref = array([[0, 1, 2], [3, 4, 5], [6, 7, 8]])¶

setUp()¶

test_angle()¶

test_get_amplitude()¶

test_get_imag()¶

test_get_phase()¶

test_get_real()¶

test_set_amplitude()¶

test_set_imag()¶

test_set_phase()¶

test_set_real()¶

hyperspy.tests.signal.test_complex_signal.test_get_unwrapped_phase_1D()¶

hyperspy.tests.signal.test_complex_signal.test_get_unwrapped_phase_2D()¶

hyperspy.tests.signal.test_complex_signal.test_get_unwrapped_phase_3D()¶

hyperspy.tests.signal.test_complex_signal2d module¶

hyperspy.tests.signal.test_complex_signal2d.test_add_phase_ramp()¶

hyperspy.tests.signal.test_eds_sem module¶

class hyperspy.tests.signal.test_eds_sem.Test_energy_units¶

Bases: object

setUp()¶

test_beam_energy()¶

test_line_energy()¶

class hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity¶

Bases: object

setUp()¶

test()¶

test_background_substraction()¶

test_eV()¶

test_estimate_integration_windows()¶

test_with_signals_examples()¶

class hyperspy.tests.signal.test_eds_sem.Test_metadata¶

Bases: object

setUp()¶

test_SEM_to_TEM()¶

test_add_elements()¶

test_add_lines()¶

test_add_lines_auto()¶

test_default_param()¶

test_get_calibration_from()¶

test_rebin_live_time()¶

test_sum_live_time()¶

test_sum_live_time2()¶

test_sum_live_time_out_arg()¶

test_take_off_angle()¶

class hyperspy.tests.signal.test_eds_sem.Test_tools_bulk¶

Bases: object

setUp()¶

test_electron_range()¶

test_xray_range()¶

hyperspy.tests.signal.test_eds_tem module¶

class hyperspy.tests.signal.test_eds_tem.Test_eds_markers¶

Bases: object

setUp()¶

test_manual_add_line()¶

test_manual_remove_element()¶

test_plot_auto_add()¶

class hyperspy.tests.signal.test_eds_tem.Test_get_lines_intentisity¶

Bases: object

test_with_signals_examples()¶

class hyperspy.tests.signal.test_eds_tem.Test_metadata¶

Bases: object

setUp()¶

test_TEM_to_SEM()¶

test_add_elements()¶

test_default_param()¶

test_get_calibration_from()¶

test_rebin_live_time()¶

test_sum_live_time1()¶

test_sum_live_time2()¶

test_sum_live_time_out_arg()¶

class hyperspy.tests.signal.test_eds_tem.Test_quantification¶

Bases: object

setUp()¶

test_edx_cross_section_to_zeta()¶

test_quant_cross_section()¶

test_quant_lorimer()¶

test_quant_zeros()¶

test_quant_zeta()¶

test_zeta_to_edx_cross_section()¶

class hyperspy.tests.signal.test_eds_tem.Test_simple_model¶

Bases: object

setUp()¶

test_intensity()¶

test_intensity_dtype_uint()¶

class hyperspy.tests.signal.test_eds_tem.Test_vacum_mask¶

Bases: object

setUp()¶

test_vacuum_mask()¶

hyperspy.tests.signal.test_eels module¶

class hyperspy.tests.signal.test_eels.TestAlignZLP¶

Bases: object

setUp()¶

test_align_zero_loss_peak_calibrate_false()¶

test_align_zero_loss_peak_calibrate_true()¶

test_align_zero_loss_peak_with_spike_signal_range()¶

test_also_aligns()¶

class hyperspy.tests.signal.test_eels.TestEstimateZLPCentre¶

Bases: object

setUp()¶

test_estimate_zero_loss_peak_centre()¶

class hyperspy.tests.signal.test_eels.TestPowerLawExtrapolation¶

Bases: object

setUp()¶

test_binned()¶

test_unbinned()¶

class hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold¶

Bases: object

setUp()¶

test_estimate_elastic_scattering_intensity()¶

test_min_in_window_with_smoothing()¶

test_min_in_window_without_smoothing()¶

test_min_in_window_without_smoothing_single_spectrum()¶

test_min_not_in_window()¶

hyperspy.tests.signal.test_fancy_indexing module¶

class hyperspy.tests.signal.test_fancy_indexing.Test1D¶

Bases: object

setUp()¶

test_float_index()¶

test_index()¶

test_minus_one_index()¶

test_navigation_indexer_navdim0(*arg, **kw)¶

test_reverse_slice()¶

test_signal_indexer_index()¶

test_signal_indexer_reverse_slice()¶

test_signal_indexer_slice()¶

test_signal_indexer_step2_slice()¶

test_slice_None()¶

test_slice_out_of_axis()¶

test_slice_out_of_range_interval_in_axis()¶

test_slice_out_of_range_interval_not_in_axis(*arg, **kw)¶

test_step0_slice(*arg, **kw)¶

class hyperspy.tests.signal.test_fancy_indexing.Test2D¶

Bases: object

setUp()¶

test_index()¶

test_partial()¶

class hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1¶

Bases: object

setUp()¶

test_1px_navigation_indexer_slice()¶

test_1px_signal_indexer_slice()¶

test_dimension_when_indexing()¶

test_dimension_when_slicing()¶

test_navigation_indexer_slice_variance_float()¶

test_navigation_indexer_slice_variance_signal()¶

test_signal_indexer_slice_variance_float()¶

test_signal_indexer_slice_variance_signal()¶

class hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_1¶

Bases: object

setUp()¶

test_1px_navigation_indexer_slice()¶

test_1px_signal_indexer_slice()¶

test_subclass_assignment()¶

class hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0¶

Bases: object

setUp()¶

test_navigation_indexer_signal_dim0()¶

test_signal_indexer_signal_dim0_idx_error1(*arg, **kw)¶

test_signal_indexer_signal_dim0_idx_error2(*arg, **kw)¶

test_signal_indexer_signal_dim0_idx_error3(*arg, **kw)¶

class hyperspy.tests.signal.test_fancy_indexing.TestEllipsis¶

Bases: object

setUp()¶

test_ellipsis_navigation()¶

test_ellipsis_navigation2()¶

test_in_between()¶

class hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments¶

Bases: object

setUp()¶

test_float_both()¶

test_float_end()¶

test_float_start()¶

test_float_step()¶

test_negative_float_step()¶

hyperspy.tests.signal.test_find_peaks1D_ohaver module¶

class hyperspy.tests.signal.test_find_peaks1D_ohaver.TestFindPeaks1DOhaver¶

Bases: object

setUp()¶

test_find_peaks1D_ohaver_high_amp_thres()¶

test_find_peaks1D_ohaver_zero_value_bug()¶

hyperspy.tests.signal.test_folding module¶

class hyperspy.tests.signal.test_folding.TestSignalFolding¶

Bases: object

setUp()¶

test_unfold_full_by_keyword()¶

test_unfold_navigation()¶

test_unfold_navigation_by_keyword()¶

test_unfold_nothing_by_keyword()¶

test_unfold_signal()¶

test_unfold_signal_by_keyword()¶

test_unfolded_context_manager()¶

test_unfolded_full_by_keywords()¶

test_unfolded_navigation_by_keyword()¶

test_unfolded_nothin_by_keyword()¶

test_unfolded_repr()¶

test_unfolded_signal_by_keyword()¶

class hyperspy.tests.signal.test_folding.TestSignalVarianceFolding¶

Bases: object

setUp()¶

test_unfold_navigation()¶

test_unfold_signal()¶

hyperspy.tests.signal.test_image module¶

class hyperspy.tests.signal.test_image.Test2D¶

Bases: object

setUp()¶

test_to_signal1D()¶

class hyperspy.tests.signal.test_image.Test3D¶

Bases: object

setUp()¶

test_to_signal1D()¶

class hyperspy.tests.signal.test_image.Test4D¶

Bases: object

setUp()¶

test_to_image()¶

hyperspy.tests.signal.test_integrate_in_range module¶

class hyperspy.tests.signal.test_integrate_in_range.Test1D¶

Bases: object

setUp()¶

test_integrate_in_range()¶

hyperspy.tests.signal.test_kramers_kronig_transform module¶

class hyperspy.tests.signal.test_kramers_kronig_transform.Test2D¶

Bases: object

setUp()¶

To test the kramers_kronig_analysis we will generate 3 EELSSpectrum instances. First a model energy loss function(ELF), in our case following the Drude bulk plasmon peak. Second, we simulate the inelastic scattering to generate a model scattering distribution (SPC). Finally, we use a lorentzian peak with integral equal to 1 to simulate a ZLP.

test_bethe_sum_rule()¶

test_df_given_n()¶

The kramers kronig analysis method applied to the signal we have just designed above will return the CDF for the Drude bulk plasmon. Hopefully, we recover the signal by inverting the CDF.

test_df_given_thickness()¶

The kramers kronig analysis method applied to the signal we have just designed above will return the CDF for the Drude bulk plasmon. Hopefully, we recover the signal by inverting the CDF.

test_thickness_estimation()¶

Kramers kronig analysis gives a rough estimation of sample thickness. As we have predefined sample thickness for our scattering distribution, we can use it for testing putposes.

test_thicness_input_array(*arg, **kw)¶

hyperspy.tests.signal.test_map_method module¶

class hyperspy.tests.signal.test_map_method.TestImage¶

Bases: object

setup()¶

test_axes_argument()¶

test_constant_sigma()¶

test_constant_sigma_navdim0()¶

test_variable_sigma()¶

class hyperspy.tests.signal.test_map_method.TestSignal0D¶

Bases: object

setup()¶

test()¶

test_nav_dim_1()¶

class hyperspy.tests.signal.test_map_method.TestSignal1D¶

Bases: object

setup()¶

test_constant_sigma()¶

hyperspy.tests.signal.test_remove_background module¶

class hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DGaussian¶

Bases: object

setUp()¶

test_background_remove_gaussian()¶

test_background_remove_gaussian_full_fit()¶

class hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DPowerLaw¶

Bases: object

setUp()¶

test_background_remove_pl()¶

test_background_remove_pl_int()¶

hyperspy.tests.signal.test_rgb module¶

class hyperspy.tests.signal.test_rgb.TestRGBA16¶

Bases: object

setUp()¶

test_torgb()¶

test_touint()¶

test_wrong_bs(*arg, **kw)¶

test_wrong_rgb(*arg, **kw)¶

class hyperspy.tests.signal.test_rgb.TestRGBA8¶

Bases: object

setUp()¶

test_torgb()¶

test_touint()¶

test_wrong_bs(*arg, **kw)¶

test_wrong_rgb(*arg, **kw)¶

hyperspy.tests.signal.test_signal_operators module¶

class hyperspy.tests.signal.test_signal_operators.TestBinaryOperators¶

Bases: object

setUp()¶

test_broadcast_in_place()¶

test_broadcast_in_place_missing_sig_wrong(*arg, **kw)¶

test_broadcast_missing_sig()¶

test_broadcast_missing_sig_and_nav()¶

test_equal_naxes_diff_shape()¶

test_sum_in_place_same_shape_signals()¶

test_sum_in_place_same_shape_signals_not_aligned()¶

test_sum_same_shape_signals()¶

test_sum_same_shape_signals_not_aligned()¶

test_sum_wrong_shape(*arg, **kw)¶

class hyperspy.tests.signal.test_signal_operators.TestUnaryOperators¶

Bases: object

setUp()¶

test_abs()¶

test_invert()¶

test_minus()¶

test_plus()¶

hyperspy.tests.signal.test_signal_subclass_conversion module¶

class hyperspy.tests.signal.test_signal_subclass_conversion.Test1d¶

Bases: object

setUp()¶

test_as_signal1D()¶

test_as_signal2D(*arg, **kw)¶

test_set_EELS()¶

class hyperspy.tests.signal.test_signal_subclass_conversion.Test2d¶

Bases: object

setUp()¶

test_as_signal1D()¶

test_as_signal1D_T()¶

test_as_signal2D()¶

test_as_signal2D_T()¶

test_s2EELS2im2s()¶

class hyperspy.tests.signal.test_signal_subclass_conversion.Test3d¶

Bases: object

setUp()¶

test_as_signal1D_0()¶

test_as_signal1D_1()¶

test_as_signal1D_2()¶

test_as_signal1D_contigous()¶

test_as_signal2D_1()¶

test_as_signal2D_2()¶

test_as_signal2D_3()¶

test_as_signal2D_contigous()¶

test_remove_axis()¶

hyperspy.tests.signal.test_spectrum module¶

class hyperspy.tests.signal.test_spectrum.Test2D¶

Bases: object

setUp()¶

test_to_signal2D()¶

class hyperspy.tests.signal.test_spectrum.Test3D¶

Bases: object

setUp()¶

test_to_signal2D()¶

class hyperspy.tests.signal.test_spectrum.Test4D¶

Bases: object

setUp()¶

test_to_signal2D()¶

hyperspy.tests.signal.test_tools module¶

class hyperspy.tests.signal.test_tools.Test2D¶

Bases: object

setUp()¶

test_axis_by_str()¶

test_crop_float()¶

test_crop_int()¶

test_estimate_poissonian_noise_copy_data()¶

test_estimate_poissonian_noise_noarg()¶

test_estimate_poissonian_noise_with_args()¶

test_histogram()¶

test_numpy_func()¶

test_numpy_unfunc_one_arg_titled()¶

test_numpy_unfunc_one_arg_untitled()¶

test_numpy_unfunc_two_arg_titled()¶

test_numpy_unfunc_two_arg_untitled()¶

test_print_summary()¶

test_split_axis0()¶

test_split_axis1()¶

test_split_axisE()¶

test_split_default()¶

test_sum_x()¶

test_sum_x_E()¶

test_unfold_image()¶

test_unfold_image_returns_true()¶

class hyperspy.tests.signal.test_tools.Test3D¶

Bases: object

setUp()¶

test_default_navigation_max()¶

test_default_navigation_mean()¶

test_default_navigation_min()¶

test_default_navigation_std()¶

test_default_navigation_sum()¶

test_default_navigation_var()¶

test_get_navigation_signal_dtype()¶

test_get_navigation_signal_given_data()¶

test_get_navigation_signal_given_dtype()¶

test_get_navigation_signal_nav_dim0()¶

test_get_navigation_signal_nav_dim1()¶

test_get_navigation_signal_nav_dim2()¶

test_get_navigation_signal_nav_dim3()¶

test_get_navigation_signal_wrong_data_shape(*arg, **kw)¶

test_get_navigation_signal_wrong_data_shape_dim0(*arg, **kw)¶

test_get_signal_signal_dtype()¶

test_get_signal_signal_given_data()¶

test_get_signal_signal_given_dtype()¶

test_get_signal_signal_nav_dim0()¶

test_get_signal_signal_nav_dim1()¶

test_get_signal_signal_nav_dim2()¶

test_get_signal_signal_nav_dim3()¶

test_get_signal_signal_wrong_data_shape(*arg, **kw)¶

test_get_signal_signal_wrong_data_shape_dim0(*arg, **kw)¶

test_indexmax()¶

test_rebin()¶

test_rebin_const_variance()¶

test_rebin_no_variance(*arg, **kw)¶

test_swap_axes_iteration()¶

test_swap_axes_simple()¶

test_valuemax()¶

class hyperspy.tests.signal.test_tools.Test4D¶

Bases: object

setUp()¶

test_diff_axis()¶

test_diff_data()¶

test_image_signal_unfolded_back_to_false()¶

test_image_signal_unfolded_deepcopy()¶

test_image_signal_unfolded_false()¶

test_image_signal_unfolded_true()¶

test_rollaxis_int()¶

test_rollaxis_str()¶

test_unfold_image()¶

test_unfold_spectrum()¶

test_unfold_spectrum_returns_true()¶

test_unfold_spectrum_signal_returns_false()¶

class hyperspy.tests.signal.test_tools.TestDerivative¶

Bases: object

setup()¶

test_derivative_data()¶

class hyperspy.tests.signal.test_tools.TestOutArg¶

Bases: object

setup()¶

test_as_image()¶

test_as_spectrum()¶

test_derivative()¶

test_diff()¶

test_get_histogram()¶

test_histogram_axis_changes()¶

test_inav()¶

test_inav_variance()¶

test_indexmax()¶

test_integrate1D()¶

test_integrate_simpson()¶

test_isig()¶

test_isig_variance()¶

test_masked_array_mean()¶

test_masked_array_sum()¶

test_masked_arrays_out()¶

test_max()¶

test_mean()¶

test_min()¶

test_rebin()¶

test_std()¶

test_sum()¶

test_sum_return_1d_signal()¶

test_valuemax()¶

test_var()¶

test_wrong_out_shape(*arg, **kw)¶

test_wrong_out_shape_masked(*arg, **kw)¶

class hyperspy.tests.signal.test_tools.TestTranspose¶

Bases: object

setUp()¶

test_navigation_int_transpose()¶

test_navigation_iterable_axes_transpose()¶

test_navigation_iterable_int_transpose()¶

test_navigation_iterable_names_transpose()¶

test_navigation_one_name(*arg, **kw)¶

test_optimize()¶

test_signal_int_transpose()¶

test_signal_iterable_axes_transpose()¶

test_signal_iterable_int_transpose()¶

test_signal_iterable_names_transpose()¶

test_signal_one_name(*arg, **kw)¶

test_too_many_navigation_axes(*arg, **kw)¶

test_too_many_signal_axes(*arg, **kw)¶

test_transpose_shortcut()¶

hyperspy.tests.signal.test_tools.test_signal_iterator()¶

Module contents¶