hyperspy.tests.model package

Submodules

hyperspy.tests.model.test_chi_squared module

class hyperspy.tests.model.test_chi_squared.TestChiSquared

Bases: object

lazify(**kwargs)

setup_method(method)

test_chisq()

test_chisq_in_range()

test_chisq_with_fit()

test_chisq_with_inactive_components()

test_dof_with_fit()

test_dof_with_inactive_components()

test_dof_with_p0()

test_lazy_chisq()

test_lazy_chisq_in_range()

test_lazy_chisq_with_fit()

test_lazy_chisq_with_inactive_components()

test_lazy_dof_with_fit()

test_lazy_dof_with_inactive_components()

test_lazy_dof_with_p0()

test_lazy_red_chisq()

test_lazy_red_chisq_with_fit()

test_red_chisq()

test_red_chisq_with_fit()

hyperspy.tests.model.test_component module

class hyperspy.tests.model.test_component.TestCallMethods

Bases: object

setup_method(method)

test_call()

test_plotting_active_component_binned()

test_plotting_active_component_notbinned()

test_plotting_active_component_out_of_range()

test_plotting_not_active_component()

class hyperspy.tests.model.test_component.TestGeneralMethods

Bases: object

setup_method(method)

test_export_all_no_twins()

test_export_all_twins()

test_export_free()

test_fetch_from_array()

test_fetch_from_array_free()

test_fetch_stored_values_all()

test_fetch_stored_values_all_twinned()

test_fetch_stored_values_all_twinned_bad()

test_fetch_stored_values_fixed()

test_set_parameters_free_all()

test_set_parameters_free_name()

test_set_parameters_not_free_all()

test_set_parameters_not_free_name()

test_update_number_parameters()

class hyperspy.tests.model.test_component.TestMultidimensionalActive

Bases: object

setup_method(method)

test_disable_pixel_switching()

test_disable_pixel_switching_current_off()

test_disable_pixel_switching_current_on()

test_enable_pixel_switching_current_off()

test_enable_pixel_switching_current_on()

hyperspy.tests.model.test_component.test_update_number_free_parameters()

hyperspy.tests.model.test_components module

class hyperspy.tests.model.test_components.TestExpression

Bases: object

setup_method(method)

test_f()

test_grad_fwhm()

test_grad_height()

test_grad_x0()

test_name()

test_position()

class hyperspy.tests.model.test_components.TestGaussian

Bases: object

setup_method(method)

test_estimate_parameters_binned()

test_estimate_parameters_unbinned()

class hyperspy.tests.model.test_components.TestHeavisideStep

Bases: object

setup_method(method)

test_float_values()

test_gradients()

test_integer_values()

test_not_sorted()

class hyperspy.tests.model.test_components.TestOffset

Bases: object

setup_method(method)

test_estimate_parameters_binned()

test_estimate_parameters_unbinned()

class hyperspy.tests.model.test_components.TestPolynomial

Bases: object

setup_method(method)

test_2d_signal()

test_3d_signal()

test_estimate_parameters_binned()

test_estimate_parameters_unbinned()

test_gradient()

class hyperspy.tests.model.test_components.TestPowerLaw

Bases: object

setup_method(method)

test_estimate_parameters_binned()

test_estimate_parameters_binned_only_current()

test_estimate_parameters_unbinned()

test_estimate_parameters_unbinned_only_current()

class hyperspy.tests.model.test_components.TestScalableFixedPattern

Bases: object

setup_method(method)

test_both_binned()

test_both_unbinned()

test_pattern_binned_signal_unbinned()

test_pattern_unbinned_signal_binned()

hyperspy.tests.model.test_components.test_expression_substitution()

hyperspy.tests.model.test_components2D module

class hyperspy.tests.model.test_components2D.TestExpression2D

Bases: object

test_no_rotation()

test_with_rotation()

test_with_rotation_center_tuple()

test_with_rotation_no_position()

test_with_rotation_no_position_init_values()

class hyperspy.tests.model.test_components2D.TestGaussian2D

Bases: object

setup_method(method)

test_values()

hyperspy.tests.model.test_edsmodel module

class hyperspy.tests.model.test_edsmodel.TestMaps

Bases: object

lazify(**kwargs)

setup_method(method)

test_lazy_lines_intensity()

test_lines_intensity()

class hyperspy.tests.model.test_edsmodel.TestlineFit

Bases: object

lazify(**kwargs)

setup_method(method)

test_calibrate_energy_offset()

test_calibrate_energy_resolution()

test_calibrate_energy_scale()

test_calibrate_xray_energy()

test_calibrate_xray_weight()

test_calibrate_xray_width()

test_edsmodel_store()

test_enable_adjust_position()

test_fit()

test_lazy_calibrate_energy_offset()

test_lazy_calibrate_energy_resolution()

test_lazy_calibrate_energy_scale()

test_lazy_calibrate_xray_energy()

test_lazy_calibrate_xray_weight()

test_lazy_calibrate_xray_width()

test_lazy_edsmodel_store()

test_lazy_enable_adjust_position()

test_lazy_fit()

test_lazy_model_creation()

test_lazy_semmodel_creation()

test_lazy_semmodel_store()

test_lazy_temmodel_creation()

test_lazy_temmodel_store()

test_model_creation()

test_semmodel_creation()

test_semmodel_store()

test_temmodel_creation()

test_temmodel_store()

hyperspy.tests.model.test_eelsmodel module

class hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel

Bases: object

lazify(**kwargs)

setup_method(method)

test_auto_add_background_true()

test_auto_add_edges_false()

test_auto_add_edges_false_names()

test_auto_add_edges_true()

test_create_eelsmodel()

test_create_eelsmodel_no_md()

test_gos()

test_lazy_auto_add_background_true()

test_lazy_auto_add_edges_false()

test_lazy_auto_add_edges_false_names()

test_lazy_auto_add_edges_true()

test_lazy_create_eelsmodel()

test_lazy_create_eelsmodel_no_md()

test_lazy_gos()

test_lazy_low_loss()

test_lazy_low_loss_bad_shape()

test_low_loss()

test_low_loss_bad_shape()

class hyperspy.tests.model.test_eelsmodel.TestEELSModel

Bases: object

lazify(**kwargs)

setup_method(method)

test_get_first_ionization_edge_energy_C()

test_get_first_ionization_edge_energy_C_B()

test_get_first_ionization_edge_energy_None()

test_get_start_energy_above()

test_get_start_energy_below()

test_get_start_energy_none()

test_lazy_get_first_ionization_edge_energy_C()

test_lazy_get_first_ionization_edge_energy_C_B()

test_lazy_get_first_ionization_edge_energy_None()

test_lazy_get_start_energy_above()

test_lazy_get_start_energy_below()

test_lazy_get_start_energy_none()

test_lazy_resume_fsw()

test_lazy_suspend_auto_fsw()

test_lazy_two_area_powerlaw_estimation_BC()

test_lazy_two_area_powerlaw_estimation_C()

test_lazy_two_area_powerlaw_estimation_no_edge()

test_resume_fsw()

test_suspend_auto_fsw()

test_two_area_powerlaw_estimation_BC()

test_two_area_powerlaw_estimation_C()

test_two_area_powerlaw_estimation_no_edge()

class hyperspy.tests.model.test_eelsmodel.TestFitBackground

Bases: object

lazify(**kwargs)

setup_method(method)

test_fit_background_B_C()

test_fit_background_C()

test_fit_background_no_edge()

test_lazy_fit_background_B_C()

test_lazy_fit_background_C()

test_lazy_fit_background_no_edge()

hyperspy.tests.model.test_fancy_indexing module

class hyperspy.tests.model.test_fancy_indexing.TestEELSModelSlicing

Bases: object

lazify(**kwargs)

setup_method(method)

test_lazy_slicing_low_loss_inav()

test_lazy_slicing_low_loss_isig()

test_slicing_low_loss_inav()

test_slicing_low_loss_isig()

class hyperspy.tests.model.test_fancy_indexing.TestModelIndexing

Bases: object

lazify(**kwargs)

setup_method(method)

test_component_copying_order()

test_lazy_component_copying_order()

test_lazy_model_navigation_indexer_slice()

test_lazy_model_signal_indexer_slice()

test_model_navigation_indexer_slice()

test_model_signal_indexer_slice()

class hyperspy.tests.model.test_fancy_indexing.TestModelIndexingClass

Bases: object

lazify(**kwargs)

setup_method(method)

test_lazy_model_class()

test_model_class()

hyperspy.tests.model.test_fit_component module

class hyperspy.tests.model.test_fit_component.TestFitOneComponent

Bases: object

setup_method(method)

test_component_not_in_model()

test_fit_component()

class hyperspy.tests.model.test_fit_component.TestFitSI

Bases: object

setup_method(method)

test_fit_spectrum_image()

class hyperspy.tests.model.test_fit_component.TestFitSeveralComponent

Bases: object

setup_method(method)

test_fit_component_active_state()

test_fit_component_free_state()

test_fit_multiple_component()

hyperspy.tests.model.test_model module

class hyperspy.tests.model.test_model.TestAdjustPosition

Bases: object

setup_method(method)

test_disable_adjust_position(mpl_cleanup)

test_enable_adjust_position(mpl_cleanup)

test_enable_all(mpl_cleanup)

test_enable_all_zero_start(mpl_cleanup)

test_manual_close(mpl_cleanup)

class hyperspy.tests.model.test_model.TestAsSignal

Bases: object

setup_method(method)

test_all_components_multidim(parallel)

test_all_components_simple(parallel)

test_one_component_multidim(parallel)

test_one_component_simple(parallel)

test_threaded_identical()

class hyperspy.tests.model.test_model.TestCreateModel

Bases: object

lazify(**kwargs)

setup_method(method)

test_create_model()

test_lazy_create_model()

class hyperspy.tests.model.test_model.TestModel1D

Bases: object

setup_method(method)

test_access_component_by_index()

test_access_component_by_name()

test_append_component()

test_append_existing_component()

test_calculating_convolution_axis()

test_component_already_in_model()

test_component_name_when_append()

test_components_class_change_invalid_name()

test_components_class_change_name()

test_components_class_change_name_del_default()

test_components_class_default()

test_delete_component_by_index()

test_delete_component_by_name()

test_delete_slice()

test_errfunc()

test_errfunc2()

test_get_component_by_component()

test_get_component_by_index()

test_get_component_by_name()

test_get_component_wrong()

test_gradient_ls()

test_gradient_ml()

test_model_function()

test_no_component_with_that_name()

test_remove_component()

test_remove_component_by_index()

test_remove_component_by_name()

test_several_component_with_same_name()

test_snap_parameter_bounds()

class hyperspy.tests.model.test_model.TestModel2D

Bases: object

setup_method(method)

test_fitting()

class hyperspy.tests.model.test_model.TestModelCallMethod

Bases: object

setup_method(method)

test_call_method_binned()

test_call_method_no_convolutions()

test_call_method_with_convolutions()

class hyperspy.tests.model.test_model.TestModelFitBinned

Bases: object

lazify(**kwargs)

setup_method(method)

test_fit_bounded_bad_starting_values_lbfgs()

test_fit_bounded_bad_starting_values_leastsq()

test_fit_bounded_bad_starting_values_mpfit()

test_fit_bounded_lbfgs()

test_fit_bounded_leastsq()

test_fit_bounded_mpfit()

test_fit_leastsq()

test_fit_leastsq_grad()

test_fit_mpfit()

test_fit_mpfit_grad()

test_fit_neldermead_leastsq()

test_fit_neldermead_ml()

test_fit_odr()

test_fit_odr_grad()

test_lazy_fit_bounded_bad_starting_values_lbfgs()

test_lazy_fit_bounded_bad_starting_values_leastsq()

test_lazy_fit_bounded_bad_starting_values_mpfit()

test_lazy_fit_bounded_lbfgs()

test_lazy_fit_bounded_leastsq()

test_lazy_fit_bounded_mpfit()

test_lazy_fit_leastsq()

test_lazy_fit_leastsq_grad()

test_lazy_fit_mpfit()

test_lazy_fit_mpfit_grad()

test_lazy_fit_neldermead_leastsq()

test_lazy_fit_neldermead_ml()

test_lazy_fit_odr()

test_lazy_fit_odr_grad()

test_lazy_wrong_method()

test_wrong_method()

class hyperspy.tests.model.test_model.TestModelJacobians

Bases: object

setup_method(method)

test_jacobian_convolved()

test_jacobian_not_convolved()

class hyperspy.tests.model.test_model.TestModelPlotCall

Bases: object

setup_method(method)

test_model2plot_other_am()

test_model2plot_own_am()

class hyperspy.tests.model.test_model.TestModelScalarVariance

Bases: object

setup_method(method)

test_std10_chisq()

test_std10_red_chisq()

test_std1_chisq()

test_std1_red_chisq()

test_std1_red_chisq_in_range()

class hyperspy.tests.model.test_model.TestModelSettingPZero

Bases: object

setup_method(method)

test_fetching_from_p0()

test_setting_boundaries()

test_setting_mpfit_parameters_info()

test_setting_p0()

class hyperspy.tests.model.test_model.TestModelSignalVariance

Bases: object

lazify(**kwargs)

setup_method(method)

test_lazy_std1_red_chisq()

test_std1_red_chisq()

class hyperspy.tests.model.test_model.TestModelWeighted

Bases: object

lazify(**kwargs)

setup_method(method)

test_chisq()

test_fit_leastsq_binned()

test_fit_leastsq_unbinned()

test_fit_mpfit_binned()

test_fit_mpfit_unbinned()

test_fit_neldermead_binned()

test_fit_neldermead_unbinned()

test_fit_odr_binned()

test_fit_odr_unbinned()

test_lazy_chisq()

test_lazy_fit_leastsq_binned()

test_lazy_fit_leastsq_unbinned()

test_lazy_fit_mpfit_binned()

test_lazy_fit_mpfit_unbinned()

test_lazy_fit_neldermead_binned()

test_lazy_fit_neldermead_unbinned()

test_lazy_fit_odr_binned()

test_lazy_fit_odr_unbinned()

test_lazy_red_chisq()

test_red_chisq()

class hyperspy.tests.model.test_model.TestMultifit

Bases: object

lazify(**kwargs)

setup_method(method)

test_bounded_snapping_leastsq()

test_bounded_snapping_mpfit()

test_fetch_only_fixed_false()

test_fetch_only_fixed_true()

test_lazy_bounded_snapping_leastsq()

test_lazy_bounded_snapping_mpfit()

test_lazy_fetch_only_fixed_false()

test_lazy_fetch_only_fixed_true()

test_lazy_parameter_as_signal_values()

test_parameter_as_signal_values()

class hyperspy.tests.model.test_model.TestSetCurrentValuesTo

Bases: object

setup_method(method)

test_set_1()

test_set_all()

class hyperspy.tests.model.test_model.TestStoreCurrentValues

Bases: object

setup_method(method)

test_active()

test_not_active()

hyperspy.tests.model.test_model_as_dictionary module

class hyperspy.tests.model.test_model_as_dictionary.DummyAxesManager

Bases: object

indices = ()

navigation_shape = [1]

navigation_size = 2

class hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary

Bases: object

setup_method(method)

test_invalid_component_name()

test_invalid_parameter_name()

test_load_dictionary()

test_to_dictionary()

class hyperspy.tests.model.test_model_as_dictionary.TestModelDictionary

Bases: object

setup_method(method)

test_load_dictionary()

test_to_dictionary()

class hyperspy.tests.model.test_model_as_dictionary.TestParameterDictionary

Bases: object

setup_method(method)

test_invalid_name()

test_load_dictionary()

test_to_dictionary()

hyperspy.tests.model.test_model_as_dictionary.remove_empty_numpy_strings(dic)

hyperspy.tests.model.test_model_selection_criteria module

class hyperspy.tests.model.test_model_selection_criteria.TestModelSelection

Bases: object

setup_method(method)

test_AIC()

test_AICc()

test_BIC()

hyperspy.tests.model.test_model_storing module

class hyperspy.tests.model.test_model_storing.TestEELSModelSaving

Bases: object

setup_method(method)

teardown_method(method)

test_save_and_load_model()

class hyperspy.tests.model.test_model_storing.TestModelSaving

Bases: object

setup_method(method)

teardown_method(method)

test_save_and_load_model()

class hyperspy.tests.model.test_model_storing.TestModelStoring

Bases: object

setup_method(method)

test_actually_stored()

test_model_store()

test_models_getattr()

test_models_pop()

test_models_restore_remove()

test_models_stub_methods()

test_store_name_error1()

test_store_name_error2()

test_store_name_error3()

test_store_name_error4()

test_store_name_error5()

hyperspy.tests.model.test_model_storing.clean_model_dictionary(d)

hyperspy.tests.model.test_parameter module

class hyperspy.tests.model.test_parameter.Dummy

Bases: object

add_one()

class hyperspy.tests.model.test_parameter.DummyAxesManager

Bases: object

indices = ()

navigation_shape = ()

class hyperspy.tests.model.test_parameter.TestGeneralMethods

Bases: object

setup_method(method)

test_as_signal()

test_store_current_values_no_indices()

test_store_current_values_normal_indices()

class hyperspy.tests.model.test_parameter.TestParameterLen1

Bases: object

setup_method(method)

test_connect_disconnect()

test_default_value()

test_ext_force_positive()

test_map_size0()

test_map_size1()

test_map_size2()

test_number_of_elements()

test_set_value()

test_set_value_bounded()

test_set_value_wrong_length()

class hyperspy.tests.model.test_parameter.TestParameterLen2

Bases: object

setup_method(method)

test_connect_disconnect()

test_default_value()

test_ext_force_positive()

test_is_tuple()

test_map_size0()

test_map_size1()

test_map_size2()

test_number_of_elements()

test_set_value()

test_set_value_bounded()

test_set_value_wrong_length()

test_set_value_wrong_length2()

class hyperspy.tests.model.test_parameter.TestParameterTwin

Bases: object

setup_method(method)

test_inherit_connections()

test_slave_fixed()

test_twin_function()

test_twin_value()

test_twin_value_bounded()

hyperspy.tests.model.test_set_parameter_state module

class hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel

Bases: object

setup_method(method)

test_set_parameter_in_model1()

test_set_parameter_in_model2()

test_set_parameter_in_model3()

test_set_parameter_in_model4()

test_set_parameter_in_model5()

test_set_parameter_in_model_free()

test_set_parameter_in_model_not_free()

hyperspy.tests.model.test_set_parameter_value module

class hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel

Bases: object

setup_method(method)

test_set_active_value1()

test_set_active_value2()

test_set_active_value3()

test_set_parameter_value1()

test_set_parameter_value2()

test_set_parameter_value3()

Module contents