Index

A

a (hyperspy._components.bleasdale.Bleasdale attribute) A (hyperspy._components.error_function.Erf attribute) (hyperspy._components.gaussianhf.GaussianHF attribute) a (hyperspy._components.logistic.Logistic attribute) A (hyperspy._components.pes_see.SEE attribute) active_is_multidimensional (hyperspy.component.Component attribute) active_strategy (hyperspy.samfire.Samfire attribute), [1] add() (hyperspy.events.EventSuppressor method) add_data() (hyperspy.drawing.marker.MarkerBase method) add_dictionary() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_elements() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) add_gaussian_noise() (hyperspy.signal.BaseSignal method) add_jobs() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] add_line() (hyperspy.drawing.signal1d.Signal1DFigure method) add_lines() (hyperspy._signals.eds.EDSSpectrum method) add_marker() (hyperspy.drawing.figure.BlittedFigure method) (hyperspy.signal.BaseSignal method) add_node() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_one() (hyperspy.tests.model.test_parameter.Dummy method) add_phase_ramp() (hyperspy._signals.complex_signal2d.ComplexSignal2D method) add_poissonian_noise() (hyperspy.signal.BaseSignal method) add_ramp() (hyperspy._signals.signal2d.Signal2D method) add_right_pointer() (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer method) add_signal() (hyperspy.io_plugins.emd.EMD method) add_signal_range() (hyperspy.models.model2d.Model2D method) add_widget() (hyperspy.roi.BaseInteractiveROI method) add_xray_lines_markers() (hyperspy._signals.eds.EDSSpectrum method) adjust_contrast() (hyperspy.drawing.image.ImagePlot method) AIC() (in module hyperspy.utils.model_selection) AIC_test (class in hyperspy.samfire_utils.goodness_of_fit_tests.information_theory) AICc() (in module hyperspy.utils.model_selection) AICc_test (class in hyperspy.samfire_utils.goodness_of_fit_tests.information_theory) alert() (in module hyperspy.messages) align1D() (hyperspy._signals.signal1d.Signal1D method) align2D() (hyperspy._signals.signal2d.Signal2D method) align_zero_loss_peak() (hyperspy._signals.eels.EELSSpectrum method) all_warnings() (in module hyperspy.misc.test_utils)

amari() (in module hyperspy.misc.machine_learning.tools) amplitude (hyperspy._signals.complex_signal.ComplexSignal attribute) amplitude_ref (hyperspy.tests.signal.test_complex_signal.TestComplexProperties attribute) angle() (hyperspy._signals.complex_signal.ComplexSignal method) angle_between() (in module hyperspy.drawing._widgets.line2d) animate_legend() (in module hyperspy.drawing.utils) antisymmetrize() (in module hyperspy.misc.math_tools) append() (hyperspy.model.BaseModel method), [1] (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method), [1] (hyperspy.samfire.StrategyList method) append2pathname() (in module hyperspy.misc.io.tools) apply() (hyperspy.gui.egerton_quantification.BackgroundRemoval method) (hyperspy.gui.egerton_quantification.SpikesRemoval method) (hyperspy.gui.egerton_quantification.SpikesRemovalHandler method) (hyperspy.gui.tools.CalibrationHandler method) (hyperspy.gui.tools.ComponentFit method) (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.ImageContrastHandler method) (hyperspy.gui.tools.IntegrateArea method) (hyperspy.gui.tools.Signal1DRangeSelectorHandler method) (hyperspy.gui.tools.SmoothingLowess method) (hyperspy.gui.tools.SmoothingSavitzkyGolay method) (hyperspy.gui.tools.SpanSelectorInSignal1DHandler method) Arctan (class in hyperspy._components.arctan) are_aligned() (in module hyperspy.misc.array_tools) are_bss_components_equivalent() (in module hyperspy.tests.mva.test_bss) are_signals_aligned() (in module hyperspy.misc.signal_tools) area (hyperspy._components.voigt.Voigt attribute) args (hyperspy.external.astroML.bayesian_blocks.FitnessFunc attribute) arguments (hyperspy.events.Event attribute) as_dictionary() (hyperspy.axes.AxesManager method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method), [1] (hyperspy.misc.utils.DictionaryTreeBrowser method) (hyperspy.model.BaseModel method), [1] as_signal() (hyperspy.component.Parameter method), [1] (hyperspy.model.BaseModel method), [1] as_signal1D() (hyperspy.signal.BaseSignal method) as_signal2D() (hyperspy.signal.BaseSignal method) asarray() (hyperspy.external.tifffile.TiffFile method) (hyperspy.external.tifffile.TiffSequence method) assert_warns() (in module hyperspy.misc.test_utils) assign_current_value_to_all() (hyperspy.component.Parameter method) assign_current_values_to_all() (hyperspy.model.BaseModel method) assign_pointer() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) assign_signal_subclass() (in module hyperspy.io) atomic_to_weight() (in module hyperspy.misc.material) attrsetter() (in module hyperspy.misc.utils) auto_update_plot (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer attribute) axes (hyperspy.drawing.widget.WidgetBase attribute) (hyperspy.external.tifffile.TiffSequence attribute) axes_are_aligned_with_data (hyperspy.axes.AxesManager attribute) axes_ticks (hyperspy.drawing.image.ImagePlot attribute) AxesManager (class in hyperspy.axes)

B

b (hyperspy._components.bleasdale.Bleasdale attribute) (hyperspy._components.logistic.Logistic attribute) B (hyperspy._components.pes_see.SEE attribute) back() (hyperspy.gui.egerton_quantification.SpikesRemovalHandler method) BackgroundRemoval (class in hyperspy.gui.egerton_quantification) backup() (hyperspy.samfire.Samfire method), [1] BaseInteractiveROI (class in hyperspy.roi) BaseModel (class in hyperspy.model) BasePointROI (class in hyperspy.roi) BaseROI (class in hyperspy.roi) BaseSignal (class in hyperspy.signal) bayesian_blocks() (in module hyperspy.external.astroML.bayesian_blocks) bcf_hyperspectra() (in module hyperspy.io_plugins.bcf) bcf_imagery() (in module hyperspy.io_plugins.bcf) BCF_reader (class in hyperspy.io_plugins.bcf) bg_to_plot() (hyperspy.gui.egerton_quantification.BackgroundRemoval method)

BIC() (in module hyperspy.utils.model_selection) BIC_test (class in hyperspy.samfire_utils.goodness_of_fit_tests.information_theory) bins() (hyperspy.external.astroML.histtools.KnuthF method) blas_enorm32 (hyperspy.external.mpfit.mpfit.mpfit attribute) blas_enorm64 (hyperspy.external.mpfit.mpfit.mpfit attribute) Bleasdale (class in hyperspy._components.bleasdale) blind_source_separation() (hyperspy.learn.mva.MVA method) BlittedFigure (class in hyperspy.drawing.figure) bragg_scattering_angle() (in module hyperspy.misc.physics_tools) bss_algorithm (hyperspy.learn.mva.LearningResults attribute) bss_factors (hyperspy.learn.mva.LearningResults attribute) bss_loadings (hyperspy.learn.mva.LearningResults attribute) ButterworthFilter (class in hyperspy.gui.tools) button_release() (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) ByteOrderError

C

c (hyperspy._components.bleasdale.Bleasdale attribute) (hyperspy._components.logistic.Logistic attribute) calc_covar() (hyperspy.external.mpfit.mpfit.mpfit method) calculate_line_position() (hyperspy.drawing._widgets.scalebar.ScaleBar method) calculate_size() (hyperspy.drawing._widgets.scalebar.ScaleBar method) calculate_text_position() (hyperspy.drawing._widgets.scalebar.ScaleBar method) calibrate() (hyperspy._signals.signal1d.Signal1D method) (hyperspy.axes.DataAxis method) CalibrationHandler (class in hyperspy.gui.tools) call() (hyperspy.external.mpfit.mpfit.mpfit method) centering_and_whitening() (in module hyperspy.learn.mva) centre (hyperspy._components.voigt.Voigt attribute) (hyperspy.learn.mva.LearningResults attribute) centre_colormap (hyperspy.drawing.image.ImagePlot attribute) centre_colormap_values() (in module hyperspy.drawing.utils) change_dtype() (hyperspy._signals.complex_signal.ComplexSignal method) (hyperspy.signal.BaseSignal method) change_strategy() (hyperspy.samfire.Samfire method), [1] change_timestep() (hyperspy.samfire_utils.samfire_worker.Worker method) check_content() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) check_data_tag_delimiter() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) check_dtype() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) check_load() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) check_that_flags_make_sense() (in module hyperspy.misc.export_dictionary) chisq (hyperspy.model.BaseModel attribute) (hyperspy.models.model2d.Model2D attribute) CircleROI (class in hyperspy.roi) CircleWidget (class in hyperspy.drawing._widgets.circle) clean() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) clean_model_dictionary() (in module hyperspy.tests.model.test_model_storing) close() (hyperspy.drawing.figure.BlittedFigure method) (hyperspy.drawing.marker.MarkerBase method) (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) (hyperspy.drawing.signal1d.Signal1DLine method) (hyperspy.drawing.tiles.HistogramTilePlot method) (hyperspy.drawing.widget.WidgetBase method) (hyperspy.external.tifffile.FileHandle method) (hyperspy.external.tifffile.TiffFile method) (hyperspy.external.tifffile.TiffSequence method) (hyperspy.external.tifffile.TiffWriter method) (hyperspy.gui.egerton_quantification.SpikesRemovalHandler method) (hyperspy.gui.messages.MessageHandler method) (hyperspy.gui.preferences.PreferencesHandler method) (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.ImageContrastHandler method) (hyperspy.gui.tools.Signal1DRangeSelectorHandler method) (hyperspy.gui.tools.Smoothing method) (hyperspy.gui.tools.SmoothingHandler method) (hyperspy.gui.tools.SpanSelectorInSignal1DHandler method) close_directly() (hyperspy.gui.tools.SpanSelectorInSignal1DHandler method) close_navigator_plot() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) close_plot (hyperspy.samfire_utils.strategy.SamfireStrategy attribute) closed (hyperspy.external.tifffile.FileHandle attribute) closest_nice_number() (in module hyperspy.misc.math_tools) closest_power_of_two() (in module hyperspy.misc.utils) coeffcients (hyperspy._components.polynomial.Polynomial attribute) colect_results() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) collect_results() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) collection_angle (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) color (hyperspy.drawing.signal1d.Signal1DLine attribute) ColorCycle (class in hyperspy.drawing.utils) comments (hyperspy.io_plugins.emd.EMD attribute) CommonSignal1D (class in hyperspy._signals.common_signal1d)

CommonSignal2D (class in hyperspy._signals.common_signal2d) comp_ref (hyperspy.tests.signal.test_complex_signal.TestComplexProperties attribute) compare_models() (hyperspy.samfire_utils.samfire_worker.Worker method) compare_two_value_dicts() (in module hyperspy.tests.samfire.test_histogram_segmenter) (in module hyperspy.tests.samfire.test_strategy) compile_function() (hyperspy._components.expression.Expression method) ComplexSignal (class in hyperspy._signals.complex_signal) ComplexSignal1D (class in hyperspy._signals.complex_signal1d) ComplexSignal2D (class in hyperspy._signals.complex_signal2d) Component (class in hyperspy.component) ComponentFit (class in hyperspy.gui.tools) components (hyperspy.model.BaseModel attribute) (hyperspy.models.model2d.Model2D attribute) config2template() (in module hyperspy.defaults_parser) configure() (hyperspy.drawing.image.ImagePlot method) connect() (hyperspy.axes.AxesManager method) (hyperspy.axes.DataAxis method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) (hyperspy.drawing.widget.WidgetBase method) (hyperspy.events.Event method) connect_navigate() (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.WidgetBase method) connected (hyperspy.events.Event attribute) Container (class in hyperspy.io_plugins.bcf) contains() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) contrast_stretching() (in module hyperspy.drawing.utils) convergence_angle (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) convert_xml_to_dict() (in module hyperspy.io_plugins.fei) coordinates (hyperspy.axes.AxesManager attribute), [1] copy() (hyperspy.axes.AxesManager method) (hyperspy.axes.DataAxis method) (hyperspy.misc.utils.DictionaryTreeBrowser method) (hyperspy.signal.BaseSignal method) copy_slice_from_whitelist() (in module hyperspy.misc.slicing) correct_INCA_format() (in module hyperspy.io_plugins.ripple) count (hyperspy.samfire.Samfire attribute) create_artificial_samfire() (in module hyperspy.tests.samfire.test_strategy) create_axes() (hyperspy.axes.AxesManager method) create_axis() (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.signal1d.Signal1DFigure method) (hyperspy.drawing.tiles.HistogramTilePlot method) create_background_line() (hyperspy.gui.egerton_quantification.BackgroundRemoval method) create_figure() (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.signal1d.Signal1DFigure method) (hyperspy.drawing.tiles.HistogramTilePlot method) (in module hyperspy.drawing.utils) create_interpolation_line() (hyperspy.gui.egerton_quantification.SpikesRemoval method) create_model() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.signal1d.Signal1D method) (hyperspy._signals.signal2d.Signal2D method) (hyperspy.samfire_utils.samfire_worker.Worker method) create_right_axis() (hyperspy.drawing.signal1d.Signal1DFigure method) create_samfire() (hyperspy.model.BaseModel method) create_worker() (in module hyperspy.samfire_utils.samfire_worker) crop() (hyperspy.signal.BaseSignal method) crop_decomposition_dimension() (hyperspy.learn.mva.LearningResults method) crop_image() (hyperspy._signals.signal2d.Signal2D method) crop_signal1D() (hyperspy._signals.signal1d.Signal1D method)

D

data (hyperspy.io_plugins.semper_unf.SemperFormat attribute) (hyperspy.signal.BaseSignal attribute) data_fuction (hyperspy.drawing.image.ImagePlot attribute) DataAxis (class in hyperspy.axes) DataDimensionError decode_lzw() (in module hyperspy.external.tifffile) decomposition() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy.learn.mva.MVA method) decomposition_algorithm (hyperspy.learn.mva.LearningResults attribute) decrease_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) deepcopy() (hyperspy.axes.AxesManager method) (hyperspy.misc.utils.DictionaryTreeBrowser method) (hyperspy.signal.BaseSignal method) default_traits_view() (hyperspy.component.Parameter method) default_value (hyperspy.component.NoneFloat attribute) defiter() (hyperspy.external.mpfit.mpfit.mpfit method) density_of_mixture() (in module hyperspy.misc.material) derivative() (hyperspy.signal.BaseSignal method) DerivativeTextHandler (class in hyperspy.gui.egerton_quantification) DerivativeTextParameters (class in hyperspy.gui.egerton_quantification) detect_spike() (hyperspy.gui.egerton_quantification.SpikesRemoval method) dict2hdfgroup() (in module hyperspy.io_plugins.hdf5) dict2sarray() (in module hyperspy.misc.array_tools) dict2signal() (in module hyperspy.io) dictionary_from_template() (in module hyperspy.defaults_parser) DictionaryTreeBrowser (class in hyperspy.misc.utils) DielectricFunction (class in hyperspy._signals.dielectric_function) diff() (hyperspy.signal.BaseSignal method) diff_model2plot() (hyperspy.gui.tools.Smoothing method) (hyperspy.gui.tools.SmoothingSavitzkyGolay method)

DigitalMicrographReader (class in hyperspy.io_plugins.digital_micrograph) dimension_array_dtype() (in module hyperspy.io_plugins.fei) dirname (hyperspy.external.tifffile.FileHandle attribute) disable_adjust_position() (hyperspy.models.model2d.Model2D method) disable_plot_components() (hyperspy.model.BaseModel method) disconnect() (hyperspy.axes.AxesManager method) (hyperspy.axes.DataAxis method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.WidgetBase method) (hyperspy.events.Event method) disconnect_navigate() (hyperspy.drawing.widget.WidgetBase method) DM3DataTypeError DM3FileVersionError DM3TagError DM3TagIDError DM3TagTypeError dof (hyperspy.model.BaseModel attribute) (hyperspy.models.model2d.Model2D attribute) DoublePowerLaw (class in hyperspy._components.eels_double_power_law) DraggableWidgetBase (class in hyperspy.drawing.widget) draw() (hyperspy.gui.tools.LineInSignal1D method) draw_patch() (hyperspy.drawing.widget.WidgetBase method) dtype (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) Dummy (class in hyperspy.tests.model.test_parameter) dummy() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) dummy_context_manager() (in module hyperspy.misc.utils) DummyAxesManager (class in hyperspy.tests.model.test_model_as_dictionary) (class in hyperspy.tests.model.test_parameter) DummyComponentsContainer (class in hyperspy.model) DummyThing (class in hyperspy.tests.utils.test_attrsetter) dump_dictionary() (in module hyperspy.misc.io.tools)

E

E0 (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) EDSConfig (class in hyperspy.defaults_parser) EDSSEMSpectrum (class in hyperspy._signals.eds_sem) EDSSpectrum (class in hyperspy._signals.eds) EDSTEMSpectrum (class in hyperspy._signals.eds_tem) edx_cross_section_to_zeta() (in module hyperspy.misc.eds.utils) EDXSpectrum (class in hyperspy.io_plugins.bcf) eels_constant() (in module hyperspy.misc.eels.tools) EELSCLEdge (class in hyperspy._components.eels_cl_edge) EELSConfig (class in hyperspy.defaults_parser) eelsdb() (in module hyperspy.misc.eels.eelsdb) EELSSpectrum (class in hyperspy._signals.eels) effective_angle (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) effective_angle() (in module hyperspy.misc.eels.effective_angle) effective_Z() (in module hyperspy.misc.physics_tools) electron_range() (in module hyperspy.misc.eds.utils) EMD (class in hyperspy.io_plugins.emd) emi_reader() (in module hyperspy.io_plugins.fei) emixml2dtb() (in module hyperspy.io_plugins.fei) enable_adjust_position() (hyperspy.models.model2d.Model2D method) enable_plot_components() (hyperspy.model.BaseModel method) energy_axis (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) energy_onset (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) energy_to_channel() (hyperspy.io_plugins.bcf.EDXSpectrum method) enorm() (hyperspy.external.mpfit.mpfit.mpfit method) ensure_directory() (in module hyperspy.misc.io.tools) ensure_parameters_in_bounds() (hyperspy.model.BaseModel method) ensure_unicode() (in module hyperspy.misc.utils) Erf (class in hyperspy._components.error_function) estimate_background_windows() (hyperspy._signals.eds.EDSSpectrum method) estimate_elastic_scattering_intensity() (hyperspy._signals.eels.EELSSpectrum method) estimate_elastic_scattering_threshold() (hyperspy._signals.eels.EELSSpectrum method)

estimate_image_shift() (in module hyperspy._signals.signal2d) estimate_integration_windows() (hyperspy._signals.eds.EDSSpectrum method) estimate_map_channels() (hyperspy.io_plugins.bcf.HyperHeader method) estimate_map_depth() (hyperspy.io_plugins.bcf.HyperHeader method) estimate_parameters() (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.gaussianhf.GaussianHF method) (hyperspy._components.offset.Offset method) (hyperspy._components.polynomial.Polynomial method) (hyperspy._components.power_law.PowerLaw method) (hyperspy._components.voigt.Voigt method) estimate_peak_width() (hyperspy._signals.signal1d.Signal1D method) estimate_poissonian_noise_variance() (hyperspy.signal.BaseSignal method) estimate_shift1D() (hyperspy._signals.signal1d.Signal1D method) estimate_shift2D() (hyperspy._signals.signal2d.Signal2D method) estimate_thickness() (hyperspy._signals.eels.EELSSpectrum method) estimate_variance_parameters() (in module hyperspy.misc.eels.tools) estimate_zero_loss_peak_centre() (hyperspy._signals.eels.EELSSpectrum method) eval() (hyperspy.external.astroML.histtools.KnuthF method) Event (class in hyperspy.events) Events (class in hyperspy.events) (class in hyperspy.external.astroML.bayesian_blocks) EventsBase (class in hyperspy.tests.test_events) EventSuppressor (class in hyperspy.events) Example1 (class in hyperspy.tests.io.test_hdf5) exp_decay() (in module hyperspy.samfire_utils.local_strategies) explained_variance (hyperspy.learn.mva.LearningResults attribute) explained_variance_ratio (hyperspy.learn.mva.LearningResults attribute) Exponential (class in hyperspy._components.exponential) export() (hyperspy.component.Component method) (hyperspy.component.Parameter method), [1] (hyperspy.misc.utils.DictionaryTreeBrowser method) export_bss_results() (hyperspy.signal.MVATools method) export_decomposition_results() (hyperspy.signal.MVATools method) export_results() (hyperspy.model.BaseModel method), [1] export_to_dictionary() (in module hyperspy.misc.export_dictionary) Expression (class in hyperspy._components.expression) ext_bounded (hyperspy.component.Parameter attribute), [1] ext_force_positive (hyperspy.component.Parameter attribute), [1] extend() (hyperspy.model.BaseModel method), [1] (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method), [1] (hyperspy.samfire.StrategyList method)

F

f_a() (in module hyperspy.tests.test_events) f_b() (in module hyperspy.tests.test_events) f_c() (in module hyperspy.tests.test_events) f_d() (in module hyperspy.tests.test_events) factors (hyperspy.learn.mva.LearningResults attribute) FancySlicing (class in hyperspy.misc.slicing) fdjac2() (hyperspy.external.mpfit.mpfit.mpfit method) fetch() (hyperspy.component.Parameter method) fetch_stored_values() (hyperspy.component.Component method) (hyperspy.model.BaseModel method), [1] fetch_values_from_array() (hyperspy.component.Component method) fft_correlation() (in module hyperspy._signals.signal2d) file_reader() (in module hyperspy.io_plugins.bcf) (in module hyperspy.io_plugins.blockfile) (in module hyperspy.io_plugins.dens) (in module hyperspy.io_plugins.digital_micrograph) (in module hyperspy.io_plugins.emd) (in module hyperspy.io_plugins.fei) (in module hyperspy.io_plugins.hdf5) (in module hyperspy.io_plugins.image) (in module hyperspy.io_plugins.mrc) (in module hyperspy.io_plugins.msa) (in module hyperspy.io_plugins.netcdf) (in module hyperspy.io_plugins.ripple) (in module hyperspy.io_plugins.semper_unf) (in module hyperspy.io_plugins.tiff) file_version() (in module hyperspy.defaults_parser) file_writer() (in module hyperspy.io_plugins.blockfile) (in module hyperspy.io_plugins.emd) (in module hyperspy.io_plugins.hdf5) (in module hyperspy.io_plugins.image) (in module hyperspy.io_plugins.msa) (in module hyperspy.io_plugins.ripple) (in module hyperspy.io_plugins.semper_unf) (in module hyperspy.io_plugins.tiff) FileHandle (class in hyperspy.external.tifffile) filehandle (hyperspy.external.tifffile.TiffFile attribute) filename (hyperspy.external.tifffile.TiffFile attribute) files (hyperspy.external.tifffile.TiffSequence attribute) filter_butterworth() (hyperspy._signals.signal1d.Signal1D method) find() (hyperspy.gui.egerton_quantification.SpikesRemoval method) (hyperspy.gui.egerton_quantification.SpikesRemovalHandler method) find_next_data_tag() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) find_next_tag() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) find_peaks1D_ohaver() (hyperspy._signals.signal1d.Signal1D method) find_peaks_ohaver() (in module hyperspy._signals.signal1d) find_subclasses() (in module hyperspy.misc.utils) fine_structure_active (hyperspy._components.eels_cl_edge.EELSCLEdge attribute), [1] fine_structure_coeff (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) fine_structure_coeff_to_txt() (hyperspy._components.eels_cl_edge.EELSCLEdge method) fine_structure_smoothing (hyperspy._components.eels_cl_edge.EELSCLEdge attribute), [1] fine_structure_width (hyperspy._components.eels_cl_edge.EELSCLEdge attribute)

fit() (hyperspy.model.BaseModel method) (hyperspy.samfire_utils.samfire_worker.Worker method) fit_component() (hyperspy.model.BaseModel method) fitness() (hyperspy.external.astroML.bayesian_blocks.Events method) (hyperspy.external.astroML.bayesian_blocks.FitnessFunc method) (hyperspy.external.astroML.bayesian_blocks.PointMeasures method) (hyperspy.external.astroML.bayesian_blocks.RegularEvents method) FitnessFunc (class in hyperspy.external.astroML.bayesian_blocks) fix_cos_vignetting() (hyperspy._components.eels_vignetting.Vignetting method) fix_side_vignetting() (hyperspy._components.eels_vignetting.Vignetting method) Flin() (in module hyperspy.external.mpfit.test_mpfit) flush() (hyperspy.external.tifffile.FileHandle method) fold() (hyperspy.signal.BaseSignal method) fourier_log_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) fourier_ratio_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) free_cos_vignetting() (hyperspy._components.eels_vignetting.Vignetting method) free_side_vignetting() (hyperspy._components.eels_vignetting.Vignetting method) freedman_bin_width() (in module hyperspy.external.astroML.histtools) from_signal() (hyperspy.io_plugins.semper_unf.SemperFormat class method) fsdict() (in module hyperspy.misc.utils) fstat (hyperspy.external.tifffile.TiffFile attribute) func (hyperspy.external.tifffile.lazyattr attribute) FUNC_A (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_B (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_MOVE (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_NONE (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_RESIZE (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_ROTATE (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) FUNC_SIZERS (hyperspy.drawing._widgets.line2d.Line2DWidget attribute) function() (hyperspy._components.arctan.Arctan method) (hyperspy._components.bleasdale.Bleasdale method) (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._components.eels_double_power_law.DoublePowerLaw method) (hyperspy._components.eels_vignetting.Vignetting method) (hyperspy._components.error_function.Erf method) (hyperspy._components.exponential.Exponential method) (hyperspy._components.expression.Expression method) (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.gaussian2d.Gaussian2D method) (hyperspy._components.heaviside.HeavisideStep method) (hyperspy._components.logistic.Logistic method) (hyperspy._components.lorentzian.Lorentzian method) (hyperspy._components.offset.Offset method) (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) (hyperspy._components.pes_see.SEE method) (hyperspy._components.polynomial.Polynomial method) (hyperspy._components.power_law.PowerLaw method) (hyperspy._components.rc.RC method) (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) (hyperspy._components.voigt.Voigt method) (hyperspy._components.volume_plasmon_drude.VolumePlasmonDrude method) (hyperspy.samfire_utils.weights.red_chisq.ReducedChiSquaredWeight method) (hyperspy.tests.samfire.test_strategy.someweight method) fwhm (hyperspy._components.gaussian.Gaussian attribute) FWHM (hyperspy._components.voigt.Voigt attribute) fwhm_x (hyperspy._components.gaussian2d.Gaussian2D attribute) fwhm_y (hyperspy._components.gaussian2d.Gaussian2D attribute)

G

gamma (hyperspy._components.voigt.Voigt attribute) gamma_prior() (hyperspy.external.astroML.bayesian_blocks.FitnessFunc method) Gaussian (class in hyperspy._components.gaussian) Gaussian2D (class in hyperspy._components.gaussian2d) gaussian_filter() (hyperspy._signals.signal1d.Signal1D method) GaussianHF (class in hyperspy._components.gaussianhf) gen_elem_list() (in module hyperspy.io_plugins.bcf) GeneralConfig (class in hyperspy.defaults_parser) generate_1D_files() (in module hyperspy.tests.io.generate_dm_testing_files) generate_2D_files() (in module hyperspy.tests.io.generate_dm_testing_files) generate_3D_files() (in module hyperspy.tests.io.generate_dm_testing_files) generate_4D_files() (in module hyperspy.tests.io.generate_dm_testing_files) generate_axis() (in module hyperspy.axes) (in module hyperspy.misc.utils) generate_component_combinations() (hyperspy.samfire_utils.samfire_worker.Worker method) generate_files() (in module hyperspy.tests.io.test_ripple) generate_subshells() (hyperspy._signals.eels.EELSSpectrum method) generate_test_model() (in module hyperspy.tests.samfire.test_samfire) generate_values() (hyperspy.samfire.Samfire method), [1] generate_values_iterator() (hyperspy.samfire_utils.samfire_worker.Worker method) get_array_memory_size_in_GiB() (in module hyperspy.misc.array_tools) get_as_BytesIO_string() (hyperspy.io_plugins.bcf.SFSTreeItem method) get_axes_dict() (hyperspy.io_plugins.digital_micrograph.ImageObject method) get_axes_from_position() (in module hyperspy.io_plugins.fei) get_axis_dictionary() (hyperspy.axes.DataAxis method) get_axis_group() (in module hyperspy.gui.axes) get_bss_factors() (hyperspy.signal.MVATools method) get_bss_loadings() (hyperspy.signal.MVATools method) get_bss_model() (hyperspy.learn.mva.MVA method) get_calibration_from() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) get_calibration_from_position() (in module hyperspy.io_plugins.fei) get_centre() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_centre_index() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_configuration_directory_path() (in module hyperspy.api) get_current_signal() (hyperspy.signal.BaseSignal method) get_data() (hyperspy.io_plugins.digital_micrograph.ImageObject method) get_data_dtype_list() (in module hyperspy.io_plugins.fei) get_data_position() (hyperspy.drawing.marker.MarkerBase method) get_data_reader() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) get_data_tag_dtype_list() (in module hyperspy.io_plugins.fei) get_data_type() (in module hyperspy.io_plugins.mrc) get_decomposition_factors() (hyperspy.signal.MVATools method) get_decomposition_loadings() (hyperspy.signal.MVATools method) get_decomposition_model() (hyperspy.learn.mva.MVA method) get_default_header() (in module hyperspy.io_plugins.blockfile) get_degree() (in module hyperspy.io_plugins.fei) get_derivative() (in module hyperspy.learn.mva) get_dimensions_from_data() (hyperspy.signal.BaseSignal method) get_electron_energy_loss_spectrum() (hyperspy._signals.dielectric_function.DielectricFunction method) get_explained_variance_ratio() (hyperspy.learn.mva.MVA method) get_fei_dtype_list() (in module hyperspy.io_plugins.mrc) get_file() (hyperspy.io_plugins.bcf.SFS_reader method) get_fine_structure_as_signal1D() (hyperspy._components.eels_cl_edge.EELSCLEdge method) get_FWHM_at_Energy() (in module hyperspy.misc.eds.utils) get_header_dtype_list() (in module hyperspy.io_plugins.blockfile) (in module hyperspy.io_plugins.fei) get_header_from_signal() (in module hyperspy.io_plugins.blockfile) get_histogram() (hyperspy.signal.BaseSignal method) get_hspy_format_version() (in module hyperspy.io_plugins.hdf5) get_image_dictionaries() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) get_interactive_ns() (in module hyperspy.misc.ipython_tools) get_interpolated_spectrum() (hyperspy.gui.egerton_quantification.SpikesRemoval method) get_interpolation_range() (hyperspy.gui.egerton_quantification.SpikesRemoval method)

get_ipython() (in module hyperspy.misc.ipython_tools) get_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) get_iter_and_properties() (hyperspy.io_plugins.bcf.SFSTreeItem method) get_lengths() (in module hyperspy.io_plugins.fei) get_line_length() (hyperspy.drawing._widgets.line2d.Line2DWidget method) get_linear_interpolation() (in module hyperspy.misc.math_tools) get_lines_intensity() (hyperspy._signals.eds.EDSSpectrum method) get_mapping() (hyperspy.io_plugins.digital_micrograph.ImageObject method) get_metadata() (hyperspy.io_plugins.digital_micrograph.ImageObject method) get_number_of_effective_electrons() (hyperspy._signals.dielectric_function.DielectricFunction method) get_parametrized_energy_axis() (hyperspy.misc.eels.base_gos.GOSBase method) get_parametrized_qaxis() (hyperspy.misc.eels.base_gos.GOSBase method) get_polynomial_order() (hyperspy._components.polynomial.Polynomial method) get_qaxis_and_gos() (hyperspy.misc.eels.base_gos.GOSBase method) (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) get_simplified_mode() (in module hyperspy.io_plugins.fei) get_size_in_indices() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_spectra_metadata() (hyperspy.io_plugins.bcf.HyperHeader method) get_std_dtype_list() (in module hyperspy.io_plugins.mrc) get_take_off_angle() (hyperspy._signals.eds.EDSSpectrum method) get_units_string() (hyperspy.drawing._widgets.scalebar.ScaleBar method) get_xml_info_from_emi() (in module hyperspy.io_plugins.fei) get_xray_lines_near_energy() (in module hyperspy.misc.eds.utils) GlobalStrategy (class in hyperspy.samfire_utils.strategy) goodness_test (class in hyperspy.samfire_utils.goodness_of_fit_tests.test_general) GOSBase (class in hyperspy.misc.eels.base_gos) gosfuncK() (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) gosfuncL() (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) grad_A() (hyperspy._components.arctan.Arctan method) grad_a() (hyperspy._components.bleasdale.Bleasdale method) grad_A() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) (hyperspy._components.error_function.Erf method) (hyperspy._components.exponential.Exponential method) (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.heaviside.HeavisideStep method) grad_a() (hyperspy._components.logistic.Logistic method) grad_A() (hyperspy._components.lorentzian.Lorentzian method) (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) (hyperspy._components.pes_see.SEE method) (hyperspy._components.power_law.PowerLaw method) grad_ab() (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) grad_b() (hyperspy._components.bleasdale.Bleasdale method) (hyperspy._components.logistic.Logistic method) grad_B() (hyperspy._components.pes_see.SEE method) grad_c() (hyperspy._components.bleasdale.Bleasdale method) (hyperspy._components.logistic.Logistic method) grad_centre() (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.lorentzian.Lorentzian method) grad_coefficients() (hyperspy._components.polynomial.Polynomial method) grad_FWHM() (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) grad_fwhm() (hyperspy._components.volume_plasmon_drude.VolumePlasmonDrude method) grad_gamma() (hyperspy._components.lorentzian.Lorentzian method) grad_intensity() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._components.volume_plasmon_drude.VolumePlasmonDrude method) grad_k() (hyperspy._components.arctan.Arctan method) grad_n() (hyperspy._components.heaviside.HeavisideStep method) grad_offset() (hyperspy._components.offset.Offset static method) grad_one_coefficient() (hyperspy._components.polynomial.Polynomial method) grad_origin() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) (hyperspy._components.error_function.Erf method) (hyperspy._components.logistic.Logistic method) (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) (hyperspy._components.power_law.PowerLaw method) grad_Phi() (hyperspy._components.pes_see.SEE method) grad_plasmon_energy() (hyperspy._components.volume_plasmon_drude.VolumePlasmonDrude method) grad_r() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) (hyperspy._components.power_law.PowerLaw method) grad_ratio() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) grad_shift() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) grad_sigma() (hyperspy._components.error_function.Erf method) (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.pes_see.SEE method) grad_tau() (hyperspy._components.exponential.Exponential method) grad_x0() (hyperspy._components.arctan.Arctan method) grad_yscale() (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) guess_gos_path() (in module hyperspy.defaults_parser) guess_record_by() (in module hyperspy.io_plugins.fei) guess_units_from_mode() (in module hyperspy.io_plugins.fei) gui() (hyperspy.axes.AxesManager method) (hyperspy.defaults_parser.Preferences method)

H

hanning2d() (in module hyperspy._signals.signal2d) hanning_taper() (hyperspy._signals.signal1d.Signal1D method) HartreeSlaterGOS (class in hyperspy.misc.eels.hartree_slater_gos) has_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) has_pool (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute), [1] hdfgroup2dict() (in module hyperspy.io_plugins.hdf5) hdfgroup2signaldict() (in module hyperspy.io_plugins.hdf5) HEADER_DTYPES (hyperspy.io_plugins.semper_unf.SemperFormat attribute) HeavisideStep (class in hyperspy._components.heaviside) height (hyperspy.drawing._widgets.rectangles.RectangleWidget attribute) (hyperspy.roi.RectangularROI attribute) histogram() (in module hyperspy.external.astroML.histtools) HistogramSegmenter (class in hyperspy.samfire_utils.segmenters.histogram) HistogramStrategy (class in hyperspy.samfire_utils.global_strategies) HistogramTilePlot (class in hyperspy.drawing.tiles) homogenize_ndim() (in module hyperspy.misc.array_tools) HorizontalLine (class in hyperspy.drawing._markers.horizontal_line) HorizontalLineSegment (class in hyperspy.drawing._markers.horizontal_line_segment) HorizontalLineWidget (class in hyperspy.drawing._widgets.horizontal_line) HydrogenicGOS (class in hyperspy.misc.eels.hydrogenic_gos) HyperHeader (class in hyperspy.io_plugins.bcf) HyperMap (class in hyperspy.io_plugins.bcf) hyperspy (module) hyperspy._components (module) hyperspy._components.arctan (module) hyperspy._components.bleasdale (module) hyperspy._components.eels_cl_edge (module) hyperspy._components.eels_double_power_law (module) hyperspy._components.eels_vignetting (module) hyperspy._components.error_function (module) hyperspy._components.exponential (module) hyperspy._components.expression (module) hyperspy._components.gaussian (module) hyperspy._components.gaussian2d (module) hyperspy._components.gaussianhf (module) hyperspy._components.heaviside (module) hyperspy._components.logistic (module) hyperspy._components.lorentzian (module) hyperspy._components.offset (module) hyperspy._components.pes_core_line_shape (module) hyperspy._components.pes_see (module) hyperspy._components.polynomial (module) hyperspy._components.power_law (module) hyperspy._components.rc (module) hyperspy._components.scalable_fixed_pattern (module) hyperspy._components.voigt (module) hyperspy._components.volume_plasmon_drude (module) hyperspy._signals (module) hyperspy._signals.common_signal1d (module) hyperspy._signals.common_signal2d (module) hyperspy._signals.complex_signal (module) hyperspy._signals.complex_signal1d (module) hyperspy._signals.complex_signal2d (module) hyperspy._signals.dielectric_function (module) hyperspy._signals.eds (module) hyperspy._signals.eds_sem (module) hyperspy._signals.eds_tem (module) hyperspy._signals.eels (module) hyperspy._signals.signal1d (module) hyperspy._signals.signal2d (module) hyperspy.api (module) hyperspy.axes (module) hyperspy.component (module) hyperspy.components1d (module) hyperspy.components2d (module) hyperspy.datasets (module) hyperspy.datasets.example_signals (module) hyperspy.decorators (module) hyperspy.defaults_parser (module) hyperspy.docstrings (module) hyperspy.docstrings.plot (module) hyperspy.docstrings.signal (module) hyperspy.drawing (module) hyperspy.drawing._markers (module) hyperspy.drawing._markers.horizontal_line (module) hyperspy.drawing._markers.horizontal_line_segment (module) hyperspy.drawing._markers.line_segment (module) hyperspy.drawing._markers.point (module) hyperspy.drawing._markers.rectangle (module) hyperspy.drawing._markers.text (module) hyperspy.drawing._markers.vertical_line (module) hyperspy.drawing._markers.vertical_line_segment (module) hyperspy.drawing._widgets (module) hyperspy.drawing._widgets.circle (module) hyperspy.drawing._widgets.horizontal_line (module) hyperspy.drawing._widgets.label (module) hyperspy.drawing._widgets.line2d (module) hyperspy.drawing._widgets.range (module) hyperspy.drawing._widgets.rectangles (module) hyperspy.drawing._widgets.scalebar (module) hyperspy.drawing._widgets.vertical_line (module) hyperspy.drawing.figure (module) hyperspy.drawing.image (module) hyperspy.drawing.marker (module) hyperspy.drawing.mpl_he (module) hyperspy.drawing.mpl_hie (module) hyperspy.drawing.mpl_hse (module) hyperspy.drawing.signal (module) hyperspy.drawing.signal1d (module) hyperspy.drawing.tiles (module) hyperspy.drawing.utils (module) hyperspy.drawing.widget (module) hyperspy.drawing.widgets (module) hyperspy.events (module) hyperspy.exceptions (module) hyperspy.external (module) hyperspy.external.astroML (module) hyperspy.external.astroML.bayesian_blocks (module) hyperspy.external.astroML.histtools (module) hyperspy.external.mpfit (module) hyperspy.external.mpfit.mpfit (module) hyperspy.external.mpfit.test_mpfit (module) hyperspy.external.progressbar (module) hyperspy.external.tifffile (module) hyperspy.gui (module) hyperspy.gui.axes (module) hyperspy.gui.eds (module) hyperspy.gui.eels (module) hyperspy.gui.egerton_quantification (module) hyperspy.gui.messages (module) hyperspy.gui.preferences (module) hyperspy.gui.tools (module) hyperspy.interactive (module) hyperspy.io (module) hyperspy.io_plugins (module) hyperspy.io_plugins.bcf (module) hyperspy.io_plugins.blockfile (module) hyperspy.io_plugins.dens (module) hyperspy.io_plugins.digital_micrograph (module) hyperspy.io_plugins.emd (module) hyperspy.io_plugins.fei (module) hyperspy.io_plugins.hdf5 (module) hyperspy.io_plugins.image (module) hyperspy.io_plugins.mrc (module) hyperspy.io_plugins.msa (module) hyperspy.io_plugins.netcdf (module) hyperspy.io_plugins.ripple (module) hyperspy.io_plugins.semper_unf (module) hyperspy.io_plugins.tiff (module) hyperspy.learn (module) hyperspy.learn.mlpca (module) hyperspy.learn.mva (module) hyperspy.learn.rpca (module) hyperspy.learn.svd_pca (module) hyperspy.logger (module) hyperspy.messages (module) hyperspy.misc (module) hyperspy.misc.array_tools (module) hyperspy.misc.config_dir (module) hyperspy.misc.eds (module) hyperspy.misc.eds.ffast_mac (module) hyperspy.misc.eds.utils (module) hyperspy.misc.eels (module) hyperspy.misc.eels.base_gos (module) hyperspy.misc.eels.eelsdb (module) hyperspy.misc.eels.effective_angle (module) hyperspy.misc.eels.hartree_slater_gos (module) hyperspy.misc.eels.hydrogenic_gos (module)

hyperspy.misc.eels.tools (module) hyperspy.misc.elements (module) hyperspy.misc.example_signals_loading (module) hyperspy.misc.export_dictionary (module) hyperspy.misc.io (module) hyperspy.misc.io.tools (module) hyperspy.misc.io.ttols (module) hyperspy.misc.io.utils_readfile (module) hyperspy.misc.ipython_tools (module) hyperspy.misc.machine_learning (module) hyperspy.misc.machine_learning.import_sklearn (module) hyperspy.misc.machine_learning.orthomax (module) hyperspy.misc.machine_learning.tools (module) hyperspy.misc.material (module) hyperspy.misc.math_tools (module) hyperspy.misc.physical_constants (module) hyperspy.misc.physics_tools (module) hyperspy.misc.rgb_tools (module) hyperspy.misc.signal_tools (module) hyperspy.misc.slicing (module) hyperspy.misc.test_utils (module) hyperspy.misc.tv_denoise (module) hyperspy.misc.utils (module) hyperspy.model (module) hyperspy.models (module) hyperspy.models.model2d (module) hyperspy.Release (module) hyperspy.roi (module) hyperspy.samfire (module) hyperspy.samfire_utils (module) hyperspy.samfire_utils.fit_tests (module) hyperspy.samfire_utils.global_strategies (module) hyperspy.samfire_utils.goodness_of_fit_tests (module) hyperspy.samfire_utils.goodness_of_fit_tests.information_theory (module) hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq (module) hyperspy.samfire_utils.goodness_of_fit_tests.test_general (module) hyperspy.samfire_utils.local_strategies (module) hyperspy.samfire_utils.samfire_kernel (module) hyperspy.samfire_utils.samfire_pool (module) hyperspy.samfire_utils.samfire_worker (module) hyperspy.samfire_utils.segmenters (module) hyperspy.samfire_utils.segmenters.histogram (module) hyperspy.samfire_utils.strategy (module) hyperspy.samfire_utils.weights (module) hyperspy.samfire_utils.weights.red_chisq (module) hyperspy.signal (module) hyperspy.signals (module) hyperspy.tests (module) hyperspy.tests.axes (module) hyperspy.tests.axes.test_axes_manager (module) hyperspy.tests.axes.test_data_axis (module) hyperspy.tests.component (module) hyperspy.tests.component.test_component_active_array (module) hyperspy.tests.component.test_component_set_parameters (module) hyperspy.tests.component.test_gaussianhf (module) hyperspy.tests.datasets (module) hyperspy.tests.datasets.test_eelsdb (module) hyperspy.tests.drawing (module) hyperspy.tests.drawing.test_figure_title (module) hyperspy.tests.drawing.test_marker (module) hyperspy.tests.io (module) hyperspy.tests.io.generate_dm_testing_files (module) hyperspy.tests.io.test_bcf (module) hyperspy.tests.io.test_blockfile (module) hyperspy.tests.io.test_dens (module) hyperspy.tests.io.test_dm3 (module) hyperspy.tests.io.test_dm4 (module) hyperspy.tests.io.test_dm_stackbuilder_plugin (module) hyperspy.tests.io.test_emd (module) hyperspy.tests.io.test_fei (module) hyperspy.tests.io.test_hdf5 (module) hyperspy.tests.io.test_msa (module) hyperspy.tests.io.test_ripple (module) hyperspy.tests.io.test_semper_unf (module) hyperspy.tests.io.test_tiff (module) hyperspy.tests.misc (module) hyperspy.tests.misc.test_arraytools (module) hyperspy.tests.misc.test_cython (module) hyperspy.tests.misc.test_image_tools (module) hyperspy.tests.misc.test_math_tools (module) hyperspy.tests.misc.test_rgbtools (module) hyperspy.tests.misc.test_test_utils (module) hyperspy.tests.model (module) hyperspy.tests.model.test_chi_squared (module) hyperspy.tests.model.test_component (module) hyperspy.tests.model.test_components (module) hyperspy.tests.model.test_components2D (module) hyperspy.tests.model.test_edsmodel (module) hyperspy.tests.model.test_eelsmodel (module) hyperspy.tests.model.test_fancy_indexing (module) hyperspy.tests.model.test_fit_component (module) hyperspy.tests.model.test_model (module) hyperspy.tests.model.test_model_as_dictionary (module) hyperspy.tests.model.test_model_selection_criteria (module) hyperspy.tests.model.test_model_storing (module) hyperspy.tests.model.test_parameter (module) hyperspy.tests.model.test_set_parameter_state (module) hyperspy.tests.model.test_set_parameter_value (module) hyperspy.tests.mva (module) hyperspy.tests.mva.test_bss (module) hyperspy.tests.mva.test_decomposition (module) hyperspy.tests.mva.test_export (module) hyperspy.tests.mva.test_rpca (module) hyperspy.tests.samfire (module) hyperspy.tests.samfire.test_goodness_of_fit_tests (module) hyperspy.tests.samfire.test_histogram_segmenter (module) hyperspy.tests.samfire.test_red_chisq_weight (module) hyperspy.tests.samfire.test_samfire (module) hyperspy.tests.samfire.test_strategy (module) hyperspy.tests.samfire.test_strategy_list (module) hyperspy.tests.samfire.test_utils (module) hyperspy.tests.signal (module) hyperspy.tests.signal.test_1D_tools (module) hyperspy.tests.signal.test_2D_tools (module) hyperspy.tests.signal.test_apply_function (module) hyperspy.tests.signal.test_assign_subclass (module) hyperspy.tests.signal.test_attributes (module) hyperspy.tests.signal.test_binned (module) hyperspy.tests.signal.test_complex_signal (module) hyperspy.tests.signal.test_complex_signal2d (module) hyperspy.tests.signal.test_eds_sem (module) hyperspy.tests.signal.test_eds_tem (module) hyperspy.tests.signal.test_eels (module) hyperspy.tests.signal.test_fancy_indexing (module) hyperspy.tests.signal.test_find_peaks1D_ohaver (module) hyperspy.tests.signal.test_folding (module) hyperspy.tests.signal.test_image (module) hyperspy.tests.signal.test_integrate_in_range (module) hyperspy.tests.signal.test_kramers_kronig_transform (module) hyperspy.tests.signal.test_remove_background (module) hyperspy.tests.signal.test_rgb (module) hyperspy.tests.signal.test_signal_operators (module) hyperspy.tests.signal.test_signal_subclass_conversion (module) hyperspy.tests.signal.test_spectrum (module) hyperspy.tests.signal.test_tools (module) hyperspy.tests.test_dictionary_tree_browser (module) hyperspy.tests.test_events (module) hyperspy.tests.test_interactive (module) hyperspy.tests.test_travis (module) hyperspy.tests.utils (module) hyperspy.tests.utils.test_attrsetter (module) hyperspy.tests.utils.test_eds (module) hyperspy.tests.utils.test_material (module) hyperspy.tests.utils.test_roi (module) hyperspy.tests.utils.test_slugify (module) hyperspy.tests.utils.test_stack (module) hyperspy.utils (module) hyperspy.utils.eds (module) hyperspy.utils.markers (module) hyperspy.utils.material (module) hyperspy.utils.model (module) hyperspy.utils.model_selection (module) hyperspy.utils.parallel_pool (module) hyperspy.utils.plot (module) hyperspy.utils.roi (module) hyperspy.utils.samfire (module)

I

ICLASS_DICT (hyperspy.io_plugins.semper_unf.SemperFormat attribute) ICLASS_DICT_INV (hyperspy.io_plugins.semper_unf.SemperFormat attribute) IFORM_DICT (hyperspy.io_plugins.semper_unf.SemperFormat attribute) IFORM_DICT_INV (hyperspy.io_plugins.semper_unf.SemperFormat attribute) ignore_warning() (in module hyperspy.misc.test_utils) imag (hyperspy._signals.complex_signal.ComplexSignal attribute) imag_ref (hyperspy.tests.signal.test_complex_signal.TestComplexProperties attribute) ImageContrastEditor (class in hyperspy.gui.tools) ImageContrastHandler (class in hyperspy.gui.tools) ImageIDError ImageModeError ImageObject (class in hyperspy.io_plugins.digital_micrograph) ImagePlot (class in hyperspy.drawing.image) imread() (in module hyperspy.external.tifffile) imsave() (in module hyperspy.external.tifffile) imshow() (in module hyperspy.external.tifffile) in_interval() (in module hyperspy.drawing._widgets.range) increase_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) incremental_filename() (in module hyperspy.misc.io.tools) index2value() (hyperspy.axes.DataAxis method) index_in_array (hyperspy.axes.DataAxis attribute) index_in_axes_manager (hyperspy.axes.DataAxis attribute) indexmax() (hyperspy.signal.BaseSignal method) indices (hyperspy.axes.AxesManager attribute) (hyperspy.drawing.widget.DraggableWidgetBase attribute) (hyperspy.tests.model.test_model_as_dictionary.DummyAxesManager attribute) (hyperspy.tests.model.test_parameter.DummyAxesManager attribute) information() (in module hyperspy.gui.messages) (in module hyperspy.messages) init_parameters() (hyperspy.component.Component method) insert() (hyperspy.model.BaseModel method) integral_as_signal() (hyperspy._components.gaussianhf.GaussianHF method) integrate1D() (hyperspy.signal.BaseSignal method) integrate_in_range() (hyperspy._signals.signal1d.Signal1D method) integrate_simpson() (hyperspy.signal.BaseSignal method) IntegrateArea (class in hyperspy.gui.tools) integrateq() (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) intensity (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) intensity_calibration (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) Interactive (class in hyperspy.interactive)

interactive() (hyperspy.roi.BaseInteractiveROI method) (in module hyperspy.interactive) interactive_range_selector() (in module hyperspy.decorators) interpolate (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern attribute) interpolate1D() (in module hyperspy._signals.signal1d) interpolate_in_between() (hyperspy._signals.signal1d.Signal1D method) interpolator (hyperspy.gui.egerton_quantification.SpikesRemoval attribute) ipython_kwargs (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) is_active() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) is_bigtiff (hyperspy.external.tifffile.TiffFile attribute) is_file (hyperspy.external.tifffile.FileHandle attribute), [1] is_fluoview (hyperspy.external.tifffile.TiffFile attribute) is_imagej (hyperspy.external.tifffile.TiffFile attribute) is_indexed (hyperspy.external.tifffile.TiffFile attribute) is_ipyparallel (hyperspy.utils.parallel_pool.ParallelPool attribute), [1] is_it_running_from_ipython() (in module hyperspy.misc.ipython_tools) is_lsm (hyperspy.external.tifffile.TiffFile attribute) is_mdgel (hyperspy.external.tifffile.TiffFile attribute) is_mediacy (hyperspy.external.tifffile.TiffFile attribute) is_micromanager (hyperspy.external.tifffile.TiffFile attribute) is_multiprocessing (hyperspy.utils.parallel_pool.ParallelPool attribute), [1] is_nih (hyperspy.external.tifffile.TiffFile attribute) is_ome (hyperspy.external.tifffile.TiffFile attribute) is_on() (hyperspy.drawing.widget.WidgetBase method) is_rgb (hyperspy.external.tifffile.TiffFile attribute) (hyperspy.signal.BaseSignal attribute) is_rgb() (in module hyperspy.misc.rgb_tools) is_rgba (hyperspy.signal.BaseSignal attribute) is_rgba() (in module hyperspy.misc.rgb_tools) is_rgbx (hyperspy.signal.BaseSignal attribute) is_rgbx() (in module hyperspy.misc.rgb_tools) is_scn (hyperspy.external.tifffile.TiffFile attribute) is_stk (hyperspy.external.tifffile.TiffFile attribute) is_valid() (hyperspy.roi.BaseROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) is_vista (hyperspy.external.tifffile.TiffFile attribute) isfloat() (in module hyperspy.misc.math_tools) isiterable() (hyperspy.drawing.marker.MarkerBase method) (in module hyperspy.misc.utils)

K

key2switch_right_pointer() (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer method) key_navigator() (hyperspy.axes.AxesManager method) keys() (hyperspy.misc.utils.DictionaryTreeBrowser method)

knuth_bin_width() (in module hyperspy.external.astroML.histtools) KnuthF (class in hyperspy.external.astroML.histtools) kramers_kronig_analysis() (hyperspy._signals.eels.EELSSpectrum method)

L

LABEL_DTYPES (hyperspy.io_plugins.semper_unf.SemperFormat attribute) LabelWidget (class in hyperspy.drawing._widgets.label) lazyattr (class in hyperspy.external.tifffile) LearningResults (class in hyperspy.learn.mva) legend_artist() (hyperspy.gui.egerton_quantification.DerivativeTextHandler method) length (hyperspy.roi.Line2DROI attribute) Line2DROI (class in hyperspy.roi) Line2DWidget (class in hyperspy.drawing._widgets.line2d) line_color_rgb (hyperspy.gui.tools.Smoothing attribute) line_properties (hyperspy.drawing.signal1d.Signal1DLine attribute), [1] LineInSignal1D (class in hyperspy.gui.tools) LineSegment (class in hyperspy.drawing._markers.line_segment) listen() (hyperspy.samfire_utils.samfire_worker.Worker method) lmpar() (hyperspy.external.mpfit.mpfit.mpfit method) Load (class in hyperspy.gui.tools) load() (hyperspy.learn.mva.LearningResults method) (in module hyperspy.io)

load_1D_EDS_SEM_spectrum() (in module hyperspy.misc.example_signals_loading) load_1D_EDS_TEM_spectrum() (in module hyperspy.misc.example_signals_loading) load_from_dictionary() (in module hyperspy.misc.export_dictionary) load_from_emd() (hyperspy.io_plugins.emd.EMD class method) load_from_unf() (hyperspy.io_plugins.semper_unf.SemperFormat class method) load_parameters_from_file() (hyperspy.model.BaseModel method) load_ser_file() (in module hyperspy.io_plugins.fei) load_single_file() (in module hyperspy.io) load_with_reader() (in module hyperspy.io) loadings (hyperspy.learn.mva.LearningResults attribute) LocalStrategy (class in hyperspy.samfire_utils.strategy) log() (hyperspy.samfire.Samfire method), [1] log_info() (hyperspy.io_plugins.emd.EMD method) (hyperspy.io_plugins.semper_unf.SemperFormat method) log_struct_array_values() (in module hyperspy.io_plugins.fei) Logistic (class in hyperspy._components.logistic) Lorentzian (class in hyperspy._components.lorentzian)

M

machar (class in hyperspy.external.mpfit.mpfit) MachineLearningConfig (class in hyperspy.defaults_parser) make_sure_ind() (in module hyperspy.samfire_utils.strategy) map() (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.AIC_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.AICc_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.BIC_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq.red_chisq_test method) (hyperspy.samfire_utils.weights.red_chisq.ReducedChiSquaredWeight method) (hyperspy.signal.BaseSignal method) (hyperspy.tests.samfire.test_strategy.someweight method) marker_properties (hyperspy.drawing.marker.MarkerBase attribute), [1] MarkerBase (class in hyperspy.drawing.marker) mass_absorption_coefficient() (in module hyperspy.misc.material) mass_absorption_mixture() (in module hyperspy.misc.material) max() (hyperspy.signal.BaseSignal method) mean (hyperspy.learn.mva.LearningResults attribute) mean() (hyperspy.signal.BaseSignal method) memmap_array() (hyperspy.external.tifffile.FileHandle method) Message (class in hyperspy.gui.messages) MessageHandler (class in hyperspy.gui.messages) MessageWithOptions (class in hyperspy.gui.messages) metadata (hyperspy.io_plugins.semper_unf.SemperFormat attribute) (hyperspy.samfire.Samfire attribute) micromanager_metadata (hyperspy.external.tifffile.TiffFile attribute) microscope (hyperspy.io_plugins.emd.EMD attribute) min() (hyperspy.signal.BaseSignal method) min_aspect (hyperspy.drawing.image.ImagePlot attribute) MissingParametersError mlpca() (in module hyperspy.learn.mlpca) mm_on_press() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) mm_on_release() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) Mock_queue (class in hyperspy.tests.samfire.test_samfire)

model (hyperspy.samfire.Samfire attribute) Model2D (class in hyperspy.models.model2d) model2plot() (hyperspy.gui.tools.ButterworthFilter method) (hyperspy.gui.tools.SmoothingLowess method) (hyperspy.gui.tools.SmoothingSavitzkyGolay method) (hyperspy.gui.tools.SmoothingTV method) ModelComponents (class in hyperspy.model) ModelConfig (class in hyperspy.defaults_parser) ModelManager (class in hyperspy.signal) ModelManager.ModelStub (class in hyperspy.signal) ModelSpecialSlicers (class in hyperspy.model) ModifiableSpanSelector (class in hyperspy.drawing._widgets.range) most_frequent() (hyperspy.samfire_utils.segmenters.histogram.HistogramSegmenter method) move_left() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) move_rect() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) move_right() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) mpfit (class in hyperspy.external.mpfit.mpfit) mpfitexpr() (in module hyperspy.external.mpfit.mpfitexpr) MPL_HyperExplorer (class in hyperspy.drawing.mpl_he) MPL_HyperImage_Explorer (class in hyperspy.drawing.mpl_hie) MPL_HyperSignal1D_Explorer (class in hyperspy.drawing.mpl_hse) multi_kernel() (in module hyperspy.samfire_utils.samfire_kernel) multifit() (hyperspy.model.BaseModel method) multiply() (hyperspy.tests.utils.test_attrsetter.DummyThing method) MVA (class in hyperspy.learn.mva) MVATools (class in hyperspy.signal) myfunctlin() (in module hyperspy.external.mpfit.test_mpfit) myfunctrosenbrock() (in module hyperspy.external.mpfit.test_mpfit)

N

name (hyperspy.external.tifffile.FileHandle attribute), [1] (hyperspy.samfire_utils.strategy.SamfireStrategy attribute) names (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) natural_sorted() (in module hyperspy.external.tifffile) navigation_indices_in_array (hyperspy.axes.AxesManager attribute) navigation_mask (hyperspy.learn.mva.LearningResults attribute) navigation_shape (hyperspy.tests.model.test_model_as_dictionary.DummyAxesManager attribute) (hyperspy.tests.model.test_parameter.DummyAxesManager attribute) navigation_size (hyperspy.tests.model.test_model_as_dictionary.DummyAxesManager attribute) navigation_sliders() (in module hyperspy.gui.axes) NavigationDimensionError NavigationSizeError nc_hyperspy_reader_0dot1() (in module hyperspy.io_plugins.netcdf) ndim (hyperspy.roi.BaseROI attribute) ndindex_nat (class in hyperspy.axes)

nearest_indices() (in module hyperspy.samfire_utils.strategy) need_pixels (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) next() (hyperspy.gui.tools.SpanSelectorInSignal1DHandler method) NoInteractiveError non_isochromaticity (hyperspy._components.voigt.Voigt attribute) NoneFloat (class in hyperspy.component) normalize_bss_components() (hyperspy.learn.mva.MVA method) normalize_decomposition_components() (hyperspy.learn.mva.MVA method) normalize_poissonian_noise() (hyperspy.learn.mva.MVA method) notebook_interaction() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.model.BaseModel method) notexp_o() (in module hyperspy.samfire_utils.goodness_of_fit_tests.information_theory) num_workers (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute)

O

Offset (class in hyperspy._components.offset) offsets (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) (hyperspy.io_plugins.semper_unf.SemperFormat attribute) on_disabling_span_selector() (hyperspy.gui.egerton_quantification.BackgroundRemoval method) (hyperspy.gui.egerton_quantification.SpikesRemoval method) (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.SpanSelectorInSignal1D method) on_figure_window_close() (in module hyperspy.drawing.utils) on_key_press() (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) on_trigger() (hyperspy.tests.test_events.EventsBase method) on_trigger2() (hyperspy.tests.test_events.EventsBase method) only_interactive() (in module hyperspy.decorators) onpick() (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) (hyperspy.drawing.widget.ResizersMixin method) onset_energy (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) open() (hyperspy.external.tifffile.FileHandle method) optimize_colorbar() (hyperspy.drawing.image.ImagePlot method) optimize_contrast() (hyperspy.drawing.image.ImagePlot method)

optional_components (hyperspy.samfire.Samfire attribute), [1] Options (class in hyperspy.gui.messages) options() (in module hyperspy.gui.messages) order (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) order_of_magnitude() (in module hyperspy.misc.math_tools) ordinal() (in module hyperspy.misc.utils) origin (hyperspy._components.error_function.Erf attribute) (hyperspy._components.logistic.Logistic attribute) original_shape (hyperspy.learn.mva.LearningResults attribute) orpca() (in module hyperspy.learn.rpca) orthomax() (in module hyperspy.misc.machine_learning.orthomax) our_help() (hyperspy.gui.tools.ImageContrastHandler static method) output_dimension (hyperspy.learn.mva.LearningResults attribute) overwrite() (in module hyperspy.misc.io.tools)

P

p0_prior() (hyperspy.external.astroML.bayesian_blocks.FitnessFunc method) pack_to_intbytes() (in module hyperspy.io_plugins.semper_unf) pages (hyperspy.external.tifffile.TiffFile attribute) ParallelPool (class in hyperspy.utils.parallel_pool) Parameter (class in hyperspy.component) parametrize_GOS() (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) parinfo() (hyperspy.external.mpfit.mpfit.mpfit method) parse() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] (hyperspy.samfire_utils.samfire_worker.Worker method) parse_array_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_ExperimentalDescription() (in module hyperspy.io_plugins.fei) parse_file() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_flag_string() (in module hyperspy.misc.export_dictionary) parse_header() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_hypermap() (hyperspy.io_plugins.bcf.BCF_reader method) parse_line() (in module hyperspy.io_plugins.bcf) parse_msa_string() (in module hyperspy.io_plugins.msa) parse_ripple() (in module hyperspy.io_plugins.ripple) parse_string_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_struct_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_tag_group() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_tag_header() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_tags() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_TrueImageHeaderInfo() (in module hyperspy.io_plugins.fei) path (hyperspy.external.tifffile.FileHandle attribute), [1] persistent_parse_hypermap() (hyperspy.io_plugins.bcf.BCF_reader method) PESCoreLineShape (class in hyperspy._components.pes_core_line_shape) phase (hyperspy._signals.complex_signal.ComplexSignal attribute) phase_ref (hyperspy.tests.signal.test_complex_signal.TestComplexProperties attribute) Phi (hyperspy._components.pes_see.SEE attribute) pid (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) ping (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) ping() (hyperspy.samfire_utils.samfire_worker.Worker method) ping_workers() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] pixel_units (hyperspy.drawing.image.ImagePlot attribute) pixels_done (hyperspy.samfire.Samfire attribute) pixels_left (hyperspy.samfire.Samfire attribute) plot() (hyperspy._signals.complex_signal.ComplexSignal method) (hyperspy._signals.complex_signal2d.ComplexSignal2D method) (hyperspy._signals.eds.EDSSpectrum method) (hyperspy._signals.signal2d.Signal2D method) (hyperspy.component.Component method) (hyperspy.component.Parameter method), [1] (hyperspy.drawing._markers.horizontal_line.HorizontalLine method) (hyperspy.drawing._markers.horizontal_line_segment.HorizontalLineSegment method) (hyperspy.drawing._markers.line_segment.LineSegment method) (hyperspy.drawing._markers.point.Point method) (hyperspy.drawing._markers.rectangle.Rectangle method) (hyperspy.drawing._markers.text.Text method) (hyperspy.drawing._markers.vertical_line.VerticalLine method) (hyperspy.drawing._markers.vertical_line_segment.VerticalLineSegment method) (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) (hyperspy.drawing.signal1d.Signal1DFigure method) (hyperspy.drawing.signal1d.Signal1DLine method) (hyperspy.drawing.tiles.HistogramTilePlot method) (hyperspy.gui.tools.Smoothing method) (hyperspy.model.BaseModel method) (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method), [1] (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) (hyperspy.signal.BaseSignal method) plot_bss_factors() (hyperspy.signal.MVATools method) plot_bss_loadings() (hyperspy.signal.MVATools method) plot_bss_results() (hyperspy.signal.MVATools method)

plot_cumulative_explained_variance_ratio() (hyperspy.learn.mva.MVA method) plot_decomposition_factors() (hyperspy.signal.MVATools method) plot_decomposition_loadings() (hyperspy.signal.MVATools method) plot_decomposition_results() (hyperspy.signal.MVATools method) plot_every (hyperspy.samfire.Samfire attribute), [1] plot_explained_variance_ratio() (hyperspy.learn.mva.MVA method) plot_histogram() (hyperspy.gui.tools.ImageContrastEditor method) plot_histograms() (in module hyperspy.drawing.utils) plot_images() (in module hyperspy.drawing.utils) plot_navigator() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) plot_results() (hyperspy.model.BaseModel method), [1] plot_RGB_map() (in module hyperspy.drawing.utils) plot_scale() (hyperspy.drawing._widgets.scalebar.ScaleBar method) plot_signal() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) (hyperspy.drawing.mpl_hie.MPL_HyperImage_Explorer method) (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer method) plot_signals() (in module hyperspy.drawing.utils) plot_spectra() (in module hyperspy.drawing.utils) PlotConfig (class in hyperspy.defaults_parser) Point (class in hyperspy.drawing._markers.point) Point1DROI (class in hyperspy.roi) Point2DROI (class in hyperspy.roi) PointMeasures (class in hyperspy.external.astroML.bayesian_blocks) poissonian_noise_normalized (hyperspy.learn.mva.LearningResults attribute) Polynomial (class in hyperspy._components.polynomial) pool (hyperspy.samfire.Samfire attribute), [1] (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) pop() (hyperspy.signal.ModelManager method) position (hyperspy.drawing.widget.DraggableWidgetBase attribute) power_law_extrapolation() (hyperspy._signals.eels.EELSSpectrum method) power_law_perc_area() (in module hyperspy.misc.eels.tools) PowerLaw (class in hyperspy._components.power_law) Preferences (class in hyperspy.defaults_parser) PreferencesHandler (class in hyperspy.gui.preferences) prepare_interpolator() (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) prepare_workers() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] print_current_values() (hyperspy.model.BaseModel method), [1] print_summary_statistics() (hyperspy.signal.BaseSignal method) prior() (hyperspy.external.astroML.bayesian_blocks.Events method) (hyperspy.external.astroML.bayesian_blocks.FitnessFunc method) (hyperspy.external.astroML.bayesian_blocks.PointMeasures method) profile_line() (hyperspy.roi.Line2DROI static method) progressbar() (in module hyperspy.external.progressbar) put() (hyperspy.tests.samfire.test_samfire.Mock_queue method) py_parse_hypermap() (hyperspy.io_plugins.bcf.BCF_reader method)

Q

qaxis (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) qrfac() (hyperspy.external.mpfit.mpfit.mpfit method) qrsolv() (hyperspy.external.mpfit.mpfit.mpfit method) quantification() (hyperspy._signals.eds_tem.EDSTEMSpectrum method)

quantification_cliff_lorimer() (in module hyperspy.misc.eds.utils) quantification_cross_section() (in module hyperspy.misc.eds.utils) quantification_zeta_factor() (in module hyperspy.misc.eds.utils)

R

radii (hyperspy.samfire_utils.strategy.LocalStrategy attribute) range (hyperspy.drawing._widgets.range.ModifiableSpanSelector attribute) RangeWidget (class in hyperspy.drawing._widgets.range) ratio() (in module hyperspy.misc.eels.tools) RC (class in hyperspy._components.rc) read() (hyperspy.external.tifffile.FileHandle method) read_array() (hyperspy.external.tifffile.FileHandle method) (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_boolean() (in module hyperspy.misc.io.utils_readfile) read_byte() (in module hyperspy.misc.io.utils_readfile) read_char() (in module hyperspy.misc.io.utils_readfile) read_double() (in module hyperspy.misc.io.utils_readfile) read_elements() (hyperspy.misc.eels.base_gos.GOSBase method) read_float() (in module hyperspy.misc.io.utils_readfile) read_long() (in module hyperspy.misc.io.utils_readfile) read_piece() (hyperspy.io_plugins.bcf.SFSTreeItem method) read_raw() (in module hyperspy.io_plugins.ripple) read_record() (hyperspy.external.tifffile.FileHandle method) read_short() (in module hyperspy.misc.io.utils_readfile) read_simple_data() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_string() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_struct() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_ulong() (in module hyperspy.misc.io.utils_readfile) read_ushort() (in module hyperspy.misc.io.utils_readfile) readgosfile() (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method), [1] readLELong() (in module hyperspy.io_plugins.fei) readLELongLong() (in module hyperspy.io_plugins.fei) readLEShort() (in module hyperspy.io_plugins.fei) real (hyperspy._signals.complex_signal.ComplexSignal attribute) real_ref (hyperspy.tests.signal.test_complex_signal.TestComplexProperties attribute) rebin() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy.signal.BaseSignal method) (in module hyperspy.misc.array_tools) recompute_out() (hyperspy.interactive.Interactive method) reconstruct_object() (in module hyperspy.misc.export_dictionary) record_by (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) Rectangle (class in hyperspy.drawing._markers.rectangle) RectangleWidget (class in hyperspy.drawing._widgets.rectangles) RectangularROI (class in hyperspy.roi) red_chisq (hyperspy.model.BaseModel attribute), [1] (hyperspy.models.model2d.Model2D attribute)

red_chisq_test (class in hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq) ReducedChiSquaredStrategy (class in hyperspy.samfire_utils.local_strategies) ReducedChiSquaredWeight (class in hyperspy.samfire_utils.weights.red_chisq) refresh() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) refresh_database() (hyperspy.samfire.Samfire method), [1] regular_array2rgbx() (in module hyperspy.misc.rgb_tools) RegularEvents (class in hyperspy.external.astroML.bayesian_blocks) rel_std_of_fraction() (in module hyperspy.misc.eels.tools) release() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) remove() (hyperspy.axes.AxesManager method) (hyperspy.drawing._widgets.scalebar.ScaleBar method) (hyperspy.model.BaseModel method), [1] (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method), [1] (hyperspy.samfire.StrategyList method) (hyperspy.samfire_utils.strategy.SamfireStrategy method) (hyperspy.signal.ModelManager method) remove_background() (hyperspy._signals.signal1d.Signal1D method) remove_empty_numpy_strings() (in module hyperspy.tests.model.test_model_as_dictionary) remove_right_pointer() (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer method) remove_signal_range() (hyperspy.models.model2d.Model2D method) remove_widget() (hyperspy.roi.BaseInteractiveROI method) remove_xray_lines_markers() (hyperspy._signals.eds.EDSSpectrum method) reset() (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.ImageContrastHandler static method) (hyperspy.samfire_utils.samfire_worker.Worker method) reset_signal_range() (hyperspy.models.model2d.Model2D method) reset_span_selector() (hyperspy.gui.tools.SpanSelectorInSignal1D method) reset_the_signal_range() (hyperspy.models.model2d.Model2D method) ResizableDraggableWidgetBase (class in hyperspy.drawing.widget) resizers (hyperspy.drawing.widget.ResizersMixin attribute) ResizersMixin (class in hyperspy.drawing.widget) resolution (hyperspy._components.voigt.Voigt attribute) restore() (hyperspy.signal.ModelManager method) reverse_bss_component() (hyperspy.learn.mva.MVA method) reverse_decomposition_component() (hyperspy.learn.mva.MVA method) rgbx2regular_array() (in module hyperspy.misc.rgb_tools) richardson_lucy_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) right_pointer_on (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer attribute) rollaxis() (hyperspy.signal.BaseSignal method) rollelem() (in module hyperspy.misc.utils) rpca_godec() (in module hyperspy.learn.rpca) run() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] run_pixel() (hyperspy.samfire_utils.samfire_worker.Worker method) running_pixels (hyperspy.samfire.Samfire attribute)

S

samf (hyperspy.samfire_utils.strategy.LocalStrategy attribute) (hyperspy.samfire_utils.strategy.SamfireStrategy attribute) Samfire (class in hyperspy.samfire) SamfirePool (class in hyperspy.samfire_utils.samfire_pool) SamfireStrategy (class in hyperspy.samfire_utils.strategy) sample (hyperspy.io_plugins.emd.EMD attribute) sarray2dict() (in module hyperspy.misc.array_tools) saturated_pixels (hyperspy.drawing.image.ImagePlot attribute) save() (hyperspy.defaults_parser.Preferences method) (hyperspy.external.tifffile.TiffWriter method) (hyperspy.learn.mva.LearningResults method) (hyperspy.model.BaseModel method) (hyperspy.signal.BaseSignal method) (in module hyperspy.io) save_every (hyperspy.samfire.Samfire attribute), [1] save_parameters2file() (hyperspy.model.BaseModel method) save_to_emd() (hyperspy.io_plugins.emd.EMD method) save_to_unf() (hyperspy.io_plugins.semper_unf.SemperFormat method) ScalableFixedPattern (class in hyperspy._components.scalable_fixed_pattern) ScaleBar (class in hyperspy.drawing._widgets.scalebar) scalebar (hyperspy.drawing.image.ImagePlot attribute) scales (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) (hyperspy.io_plugins.semper_unf.SemperFormat attribute) scotts_bin_width() (in module hyperspy.external.astroML.histtools) SEE (class in hyperspy._components.pes_see) seek() (hyperspy.external.tifffile.FileHandle method) segmenter (hyperspy.samfire_utils.strategy.GlobalStrategy attribute) select() (hyperspy.drawing.widget.WidgetBase method) SEMParametersUI (class in hyperspy.gui.eds) SemperFormat (class in hyperspy.io_plugins.semper_unf) send_results() (hyperspy.samfire_utils.samfire_worker.Worker method) ser_reader() (in module hyperspy.io_plugins.fei) series (hyperspy.external.tifffile.TiffFile attribute), [1] set_background_estimator() (hyperspy.gui.egerton_quantification.BackgroundRemoval method) set_boundaries() (hyperspy.model.BaseModel method) set_bounds() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) set_color() (hyperspy.drawing._widgets.scalebar.ScaleBar method) set_component_active_value() (hyperspy.model.BaseModel method) set_contrast() (hyperspy.drawing.image.ImagePlot method) set_current_values_to() (hyperspy.model.BaseModel method) set_data() (hyperspy.drawing.marker.MarkerBase method) set_elements() (hyperspy._signals.eds.EDSSpectrum method) set_ets_toolkit() (in module hyperspy.gui) set_ibounds() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) set_index_from_value() (hyperspy.axes.DataAxis method) set_initial() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) set_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) set_length() (hyperspy.drawing._widgets.scalebar.ScaleBar method) set_line_properties() (hyperspy.drawing.signal1d.Signal1DLine method), [1] set_lines() (hyperspy._signals.eds.EDSSpectrum method) set_log_level() (in module hyperspy.logger) set_marker_properties() (hyperspy.drawing.marker.MarkerBase method) set_microscope_parameters() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) set_mpfit_parameters_info() (hyperspy.model.BaseModel method) set_mpl_ax() (hyperspy.drawing.widget.WidgetBase method) set_on() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.ResizersMixin method) (hyperspy.drawing.widget.WidgetBase method) set_optional_names() (hyperspy.samfire_utils.samfire_worker.Worker method) set_parameters_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_not_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_value() (hyperspy.model.BaseModel method), [1] set_signal_dimension() (hyperspy.axes.AxesManager method) set_signal_origin() (hyperspy.signal.BaseSignal method) set_signal_range() (hyperspy.models.model2d.Model2D method) set_signal_type() (hyperspy.signal.BaseSignal method) set_size_in_indices() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) set_tex_bold() (hyperspy.drawing._widgets.scalebar.ScaleBar method) set_values() (hyperspy.samfire_utils.samfire_worker.Worker method) setup() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) (hyperspy.tests.axes.test_axes_manager.TestAxesManager method) setUp() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) (hyperspy.tests.component.test_component_active_array.TestParametersAsSignals method) (hyperspy.tests.component.test_component_set_parameters.TestSetParameters method) (hyperspy.tests.io.test_fei.TestFEIReader method) (hyperspy.tests.io.test_hdf5.TestAxesConfiguration method) (hyperspy.tests.io.test_hdf5.TestExample1_10 method) (hyperspy.tests.io.test_hdf5.TestExample1_11 method) (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) (hyperspy.tests.io.test_hdf5.TestLoadingOOMReadOnly method) (hyperspy.tests.io.test_hdf5.TestPassingArgs method) (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) (hyperspy.tests.io.test_msa.TestExample1 method) (hyperspy.tests.io.test_msa.TestExample2 method) (hyperspy.tests.misc.test_image_tools.TestImageStretching method) (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) (hyperspy.tests.model.test_chi_squared.TestChiSquared method) (hyperspy.tests.model.test_component.TestCallMethods method) (hyperspy.tests.model.test_component.TestGeneralMethods method) (hyperspy.tests.model.test_component.TestMultidimensionalActive method) (hyperspy.tests.model.test_components.TestExpression method) (hyperspy.tests.model.test_components.TestGaussian method) (hyperspy.tests.model.test_components.TestHeavisideStep method) (hyperspy.tests.model.test_components.TestOffset method) (hyperspy.tests.model.test_components.TestPolynomial method) (hyperspy.tests.model.test_components.TestPowerLaw method) (hyperspy.tests.model.test_components.TestScalableFixedPattern method) (hyperspy.tests.model.test_components2D.TestGaussian2D method) (hyperspy.tests.model.test_edsmodel.TestMaps method) (hyperspy.tests.model.test_edsmodel.TestlineFit method) (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) (hyperspy.tests.model.test_eelsmodel.TestFitBackground method) (hyperspy.tests.model.test_fancy_indexing.TestEELSModelSlicing method) (hyperspy.tests.model.test_fancy_indexing.TestModelIndexing method) (hyperspy.tests.model.test_fancy_indexing.TestModelIndexingClass method) (hyperspy.tests.model.test_fit_component.TestFitOneComponent method) (hyperspy.tests.model.test_fit_component.TestFitSeveralComponent method) (hyperspy.tests.model.test_model.TestAdjustPosition method) (hyperspy.tests.model.test_model.TestAsSignal method) (hyperspy.tests.model.test_model.TestCreateModel method) (hyperspy.tests.model.test_model.TestModel1D method) (hyperspy.tests.model.test_model.TestModel2D method) (hyperspy.tests.model.test_model.TestModelCallMethod method) (hyperspy.tests.model.test_model.TestModelFitBinned method) (hyperspy.tests.model.test_model.TestModelJacobians method) (hyperspy.tests.model.test_model.TestModelPlotCall method) (hyperspy.tests.model.test_model.TestModelScalarVariance method) (hyperspy.tests.model.test_model.TestModelSettingPZero method) (hyperspy.tests.model.test_model.TestModelSignalVariance method) (hyperspy.tests.model.test_model.TestModelWeighted method) (hyperspy.tests.model.test_model.TestMultifit method) (hyperspy.tests.model.test_model.TestSetCurrentValuesTo method) (hyperspy.tests.model.test_model.TestStoreCurrentValues method) (hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestModelDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestParameterDictionary method) (hyperspy.tests.model.test_model_selection_criteria.TestModelSelection method) (hyperspy.tests.model.test_model_storing.TestModelSaving method) (hyperspy.tests.model.test_model_storing.TestModelStoring method) (hyperspy.tests.model.test_parameter.TestGeneralMethods method) (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) (hyperspy.tests.model.test_parameter.TestParameterTwin method) (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) (hyperspy.tests.mva.test_decomposition.TestGetExplainedVarinaceRatio method) (hyperspy.tests.mva.test_decomposition.TestNdAxes method) (hyperspy.tests.mva.test_decomposition.TestNormalizeComponents method) (hyperspy.tests.mva.test_decomposition.TestReturnInfo method) (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) (hyperspy.tests.mva.test_export.TestMVAExport method) (hyperspy.tests.mva.test_rpca.TestORPCA method) (hyperspy.tests.mva.test_rpca.TestRPCA method) (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestInformationCriteria method) (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestRedChisq method) (hyperspy.tests.samfire.test_histogram_segmenter.TestHistogramSegmenter method) (hyperspy.tests.samfire.test_red_chisq_weight.Test_Red_chisq_weight method) (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) (hyperspy.tests.samfire.test_samfire.TestSamfireMain method) (hyperspy.tests.samfire.test_samfire.TestSamfireWorker method) (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) (hyperspy.tests.samfire.test_strategy.TestLocalWithModel method) (hyperspy.tests.samfire.test_strategy_list.TestStrategyList method) (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) (hyperspy.tests.signal.test_1D_tools.TestAlignTools method) (hyperspy.tests.signal.test_1D_tools.TestEstimatePeakWidth method) (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) (hyperspy.tests.signal.test_1D_tools.TestShift1D method) (hyperspy.tests.signal.test_1D_tools.TestSmoothing method) (hyperspy.tests.signal.test_2D_tools.TestAlignTools method) (hyperspy.tests.signal.test_2D_tools.TestSubPixelAlign method) setup() (hyperspy.tests.signal.test_apply_function.TestImage method) (hyperspy.tests.signal.test_apply_function.TestSignal1D method) setUp() (hyperspy.tests.signal.test_assign_subclass.TestConvertBaseSignal method) (hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal method) (hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal1D method) (hyperspy.tests.signal.test_assign_subclass.TestConvertSignal1D method) (hyperspy.tests.signal.test_binned.TestModelBinned method) (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) (hyperspy.tests.signal.test_eds_sem.Test_energy_units method) (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_sem.Test_tools_bulk method) (hyperspy.tests.signal.test_eds_tem.Test_eds_markers method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_quantification method) (hyperspy.tests.signal.test_eds_tem.Test_simple_model method) (hyperspy.tests.signal.test_eds_tem.Test_vacum_mask method) (hyperspy.tests.signal.test_eels.TestAlignZLP method) (hyperspy.tests.signal.test_eels.TestEstimateZLPCentre method) (hyperspy.tests.signal.test_eels.TestPowerLawExtrapolation method) (hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold method) (hyperspy.tests.signal.test_fancy_indexing.Test1D method) (hyperspy.tests.signal.test_fancy_indexing.Test2D method) (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_1 method) (hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0 method) (hyperspy.tests.signal.test_fancy_indexing.TestEllipsis method) (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) (hyperspy.tests.signal.test_find_peaks1D_ohaver.TestFindPeaks1DOhaver method) (hyperspy.tests.signal.test_folding.TestSignalFolding method) (hyperspy.tests.signal.test_folding.TestSignalVarianceFolding method) (hyperspy.tests.signal.test_image.Test2D method) (hyperspy.tests.signal.test_image.Test3D method) (hyperspy.tests.signal.test_image.Test4D method) (hyperspy.tests.signal.test_integrate_in_range.Test1D method) (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DGaussian method) (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DPowerLaw method) (hyperspy.tests.signal.test_rgb.TestRGBA16 method) (hyperspy.tests.signal.test_rgb.TestRGBA8 method) (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) (hyperspy.tests.signal.test_signal_operators.TestUnaryOperators method) (hyperspy.tests.signal.test_signal_subclass_conversion.Test1d method) (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) (hyperspy.tests.signal.test_spectrum.Test2D method) (hyperspy.tests.signal.test_spectrum.Test3D method) (hyperspy.tests.signal.test_spectrum.Test4D method) (hyperspy.tests.signal.test_tools.Test2D method) (hyperspy.tests.signal.test_tools.Test3D method) (hyperspy.tests.signal.test_tools.Test4D method) setup() (hyperspy.tests.signal.test_tools.TestDerivative method) (hyperspy.tests.signal.test_tools.TestOutArg method) setUp() (hyperspy.tests.test_dictionary_tree_browser.TestDictionaryBrowser method) (hyperspy.tests.test_events.TestEventsSignatures method) (hyperspy.tests.test_events.TestEventsSuppression method) setup() (hyperspy.tests.test_events.TestTriggerArgResolution method) setUp() (hyperspy.tests.test_interactive.TestInteractive method) (hyperspy.tests.utils.test_attrsetter.TestAttrSetter method) (hyperspy.tests.utils.test_material.TestWeightToFromAtomic method) setup() (hyperspy.tests.utils.test_roi.TestInteractive method) setUp() (hyperspy.tests.utils.test_roi.TestROIs method) (hyperspy.tests.utils.test_stack.TestUtilsStack method) setup() (hyperspy.utils.parallel_pool.ParallelPool method), [1] setup_compression_metadata() (hyperspy.io_plugins.bcf.SFSTreeItem method) setup_test() (hyperspy.samfire_utils.samfire_worker.Worker method) SFS_reader (class in hyperspy.io_plugins.bcf) SFSTreeItem (class in hyperspy.io_plugins.bcf) shape (hyperspy.axes.AxesManager attribute) (hyperspy.external.tifffile.TiffSequence attribute) (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) ShapeError shift1D() (hyperspy._signals.signal1d.Signal1D method) shift_image() (in module hyperspy._signals.signal2d) shirley_background (hyperspy._components.voigt.Voigt attribute) shorten_name() (in module hyperspy.misc.utils)

show() (hyperspy.axes.AxesManager method) sigma (hyperspy._components.error_function.Erf attribute) (hyperspy._components.gaussianhf.GaussianHF attribute) (hyperspy._components.pes_see.SEE attribute) signal (hyperspy.model.BaseModel attribute) (hyperspy.models.model2d.Model2D attribute), [1] Signal1D (class in hyperspy._signals.signal1d) Signal1DCalibration (class in hyperspy.gui.tools) Signal1DFigure (class in hyperspy.drawing.signal1d) Signal1DLine (class in hyperspy.drawing.signal1d) Signal1DRangeSelector (class in hyperspy.gui.tools) Signal1DRangeSelectorHandler (class in hyperspy.gui.tools) Signal2D (class in hyperspy._signals.signal2d) signal_indices_in_array (hyperspy.axes.AxesManager attribute) signal_mask (hyperspy.learn.mva.LearningResults attribute) signal_type (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) SignalDimensionError signals (hyperspy.io_plugins.emd.EMD attribute) SignalSizeError simple_decorator() (in module hyperspy.decorators) simple_type (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader attribute) single_kernel() (in module hyperspy.samfire_utils.samfire_kernel) size (hyperspy.drawing.widget.ResizableDraggableWidgetBase attribute) (hyperspy.external.tifffile.FileHandle attribute), [1] (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) skipif4() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) sleep() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) (hyperspy.samfire_utils.samfire_worker.Worker method) (hyperspy.utils.parallel_pool.ParallelPool method), [1] slugify() (in module hyperspy.misc.utils) smooth_lowess() (hyperspy._signals.signal1d.Signal1D method) smooth_savitzky_golay() (hyperspy._signals.signal1d.Signal1D method) smooth_tv() (hyperspy._signals.signal1d.Signal1D method) Smoothing (class in hyperspy.gui.tools) SmoothingHandler (class in hyperspy.gui.tools) SmoothingLowess (class in hyperspy.gui.tools) SmoothingSavitzkyGolay (class in hyperspy.gui.tools) SmoothingTV (class in hyperspy.gui.tools) snap_all (hyperspy.drawing.widget.ResizableDraggableWidgetBase attribute) snap_position (hyperspy.drawing.widget.DraggableWidgetBase attribute) snap_size (hyperspy.drawing.widget.ResizableDraggableWidgetBase attribute) sobel_filter() (in module hyperspy._signals.signal2d) someweight (class in hyperspy.tests.samfire.test_strategy) span_selector_changed() (hyperspy.gui.egerton_quantification.BackgroundRemoval method) (hyperspy.gui.egerton_quantification.SpikesRemoval method) span_selector_switch() (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.SpanSelectorInSignal1D method) SpanROI (class in hyperspy.roi) SpanSelectorInSignal1D (class in hyperspy.gui.tools) SpanSelectorInSignal1DHandler (class in hyperspy.gui.tools) SpecialSlicers (class in hyperspy.misc.slicing) SpecialSlicersSignal (class in hyperspy.signal) spikes_removal_tool() (hyperspy._signals.signal1d.Signal1D method) SpikesRemoval (class in hyperspy.gui.egerton_quantification) SpikesRemovalHandler (class in hyperspy.gui.egerton_quantification) spin_orbit_branching_ratio (hyperspy._components.voigt.Voigt attribute) spin_orbit_splitting (hyperspy._components.voigt.Voigt attribute) spin_orbit_splitting_energy (hyperspy._components.voigt.Voigt attribute) split() (hyperspy.signal.BaseSignal method) SquareWidget (class in hyperspy.drawing._widgets.rectangles) squeeze() (hyperspy.signal.BaseSignal method) stack() (in module hyperspy.misc.utils) start() (hyperspy.samfire.Samfire method), [1] start_listening() (hyperspy.samfire_utils.samfire_worker.Worker method) stash_active_state() (in module hyperspy.misc.utils) std() (hyperspy.signal.BaseSignal method) stop() (hyperspy.samfire.Samfire method) (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] stop_listening() (hyperspy.samfire_utils.samfire_worker.Worker method) store() (hyperspy.model.BaseModel method) (hyperspy.signal.ModelManager method) store_current_parameters_in_map() (hyperspy.component.Component method) store_current_value_in_array() (hyperspy.component.Parameter method) store_current_values() (hyperspy.model.BaseModel method), [1] str2num() (in module hyperspy.misc.utils) strategies (hyperspy.samfire.Samfire attribute) StrategyList (class in hyperspy.samfire) string (hyperspy.drawing._widgets.label.LabelWidget attribute) stripnull() (in module hyperspy.external.tifffile) strlist2enumeration() (in module hyperspy.misc.utils) subplot_parameters() (in module hyperspy.drawing.utils) sum() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy.signal.BaseSignal method) summary() (hyperspy.component.Component method) (hyperspy.learn.mva.LearningResults method) suppress() (hyperspy.events.Event method) (hyperspy.events.EventSuppressor method) (hyperspy.events.Events method) suppress_callback() (hyperspy.events.Event method) suspend_update() (hyperspy.model.BaseModel method) svd_pca() (in module hyperspy.learn.svd_pca) swap_axes() (hyperspy.signal.BaseSignal method) swapelem() (in module hyperspy.misc.utils) switch_left_right() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) switch_on_off() (hyperspy.gui.tools.LineInSignal1D method) symmetrize() (in module hyperspy.misc.math_tools)

T

TAGS (hyperspy.external.tifffile.TiffWriter attribute) take_off_angle() (in module hyperspy.misc.eds.utils) tearDown() (hyperspy.tests.io.test_emd.TestCaseSaveAndRead method) (hyperspy.tests.io.test_hdf5.TestAxesConfiguration method) (hyperspy.tests.io.test_hdf5.TestLoadingOOMReadOnly method) (hyperspy.tests.io.test_hdf5.TestPassingArgs method) (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) (hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadByte method) (hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadImage method) (hyperspy.tests.model.test_model_storing.TestModelSaving method) tell() (hyperspy.external.tifffile.FileHandle method) TEMParametersUI (class in hyperspy.gui.eds) (class in hyperspy.gui.eels) template2config() (in module hyperspy.defaults_parser) test() (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.AIC_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.AICc_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.information_theory.BIC_test method) (hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq.red_chisq_test method) (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) (in module hyperspy.tests) Test1D (class in hyperspy.tests.signal.test_fancy_indexing) (class in hyperspy.tests.signal.test_integrate_in_range) Test1d (class in hyperspy.tests.signal.test_signal_subclass_conversion) Test2D (class in hyperspy.tests.signal.test_fancy_indexing) (class in hyperspy.tests.signal.test_image) (class in hyperspy.tests.signal.test_kramers_kronig_transform) Test2d (class in hyperspy.tests.signal.test_signal_subclass_conversion) Test2D (class in hyperspy.tests.signal.test_spectrum) (class in hyperspy.tests.signal.test_tools) Test3D (class in hyperspy.tests.signal.test_image) Test3d (class in hyperspy.tests.signal.test_signal_subclass_conversion) Test3D (class in hyperspy.tests.signal.test_spectrum) (class in hyperspy.tests.signal.test_tools) Test3D_Navigate_0_and_1 (class in hyperspy.tests.signal.test_fancy_indexing) Test3D_Navigate_1 (class in hyperspy.tests.signal.test_fancy_indexing) Test3D_SignalDim0 (class in hyperspy.tests.signal.test_fancy_indexing) Test4D (class in hyperspy.tests.signal.test_image) (class in hyperspy.tests.signal.test_spectrum) (class in hyperspy.tests.signal.test_tools) test_1px_navigation_indexer_slice() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_1 method) test_1px_signal_indexer_slice() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_1 method) test_2d_line_img_plot() (hyperspy.tests.utils.test_roi.TestROIs method) test_2d_line_spec_plot() (hyperspy.tests.utils.test_roi.TestROIs method) test_2d_signal() (hyperspy.tests.model.test_components.TestPolynomial method) test_3d_signal() (hyperspy.tests.model.test_components.TestPolynomial method) test_abs() (hyperspy.tests.signal.test_signal_operators.TestUnaryOperators method) test_access_component_by_index() (hyperspy.tests.model.test_model.TestModel1D method) test_access_component_by_name() (hyperspy.tests.model.test_model.TestModel1D method) test_active() (hyperspy.tests.model.test_model.TestStoreCurrentValues method) test_actually_stored() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_add_dictionary() (hyperspy.tests.test_dictionary_tree_browser.TestDictionaryBrowser method) test_add_elements() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_add_lines() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) test_add_lines_auto() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) test_add_model() (hyperspy.tests.samfire.test_samfire.TestSamfireWorker method) test_add_phase_ramp() (in module hyperspy.tests.signal.test_complex_signal2d) test_add_ramp() (in module hyperspy.tests.signal.test_2D_tools) test_add_signal_in_dictionary() (hyperspy.tests.test_dictionary_tree_browser.TestDictionaryBrowser method) test_AIC() (hyperspy.tests.model.test_model_selection_criteria.TestModelSelection method) test_AICc() (hyperspy.tests.model.test_model_selection_criteria.TestModelSelection method) test_align() (hyperspy.tests.signal.test_1D_tools.TestAlignTools method) (hyperspy.tests.signal.test_2D_tools.TestAlignTools method) test_align_expand() (hyperspy.tests.signal.test_1D_tools.TestAlignTools method) (hyperspy.tests.signal.test_2D_tools.TestAlignTools method) test_align_subpix() (hyperspy.tests.signal.test_2D_tools.TestSubPixelAlign method) test_align_zero_loss_peak_calibrate_false() (hyperspy.tests.signal.test_eels.TestAlignZLP method) test_align_zero_loss_peak_calibrate_true() (hyperspy.tests.signal.test_eels.TestAlignZLP method) test_align_zero_loss_peak_with_spike_signal_range() (hyperspy.tests.signal.test_eels.TestAlignZLP method) test_all_components_multidim() (hyperspy.tests.model.test_model.TestAsSignal method) test_all_components_simple() (hyperspy.tests.model.test_model.TestAsSignal method) test_all_kwargs_resolution() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_already_connected() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_also_aligns() (hyperspy.tests.signal.test_eels.TestAlignZLP method) test_always_active() (hyperspy.tests.component.test_component_active_array.TestParametersAsSignals method) test_angle() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_append() (hyperspy.tests.samfire.test_strategy_list.TestStrategyList method) test_append_component() (hyperspy.tests.model.test_model.TestModel1D method) test_append_existing_component() (hyperspy.tests.model.test_model.TestModel1D method) test_arguments() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_as_image() (hyperspy.tests.signal.test_tools.TestOutArg method) test_as_signal() (hyperspy.tests.model.test_parameter.TestGeneralMethods method) test_as_signal1D() (hyperspy.tests.signal.test_signal_subclass_conversion.Test1d method) (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) test_as_signal1D_0() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal1D_1() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal1D_2() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal1D_contigous() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal1D_T() (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) test_as_signal2D() (hyperspy.tests.signal.test_signal_subclass_conversion.Test1d method) (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) test_as_signal2D_1() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal2D_2() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal2D_3() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal2D_contigous() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_as_signal2D_T() (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) test_as_spectrum() (hyperspy.tests.signal.test_tools.TestOutArg method) test_assert_warns_full_message() (in module hyperspy.tests.misc.test_test_utils) test_assert_warns_message_fails() (in module hyperspy.tests.misc.test_test_utils) test_assert_warns_partial_message() (in module hyperspy.tests.misc.test_test_utils) test_assert_warns_regex_message() (in module hyperspy.tests.misc.test_test_utils) test_assert_warns_type() (in module hyperspy.tests.misc.test_test_utils) test_assert_warns_type_fails() (in module hyperspy.tests.misc.test_test_utils) test_atomic_to_weight() (hyperspy.tests.utils.test_material.TestWeightToFromAtomic method) test_auto_add_background_true() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_auto_add_edges_false() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_auto_add_edges_false_names() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_auto_add_edges_true() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_auto_update() (hyperspy.tests.drawing.test_marker.Test_markers method) test_axes_argument() (hyperspy.tests.signal.test_apply_function.TestImage method) test_axes_configuration() (hyperspy.tests.io.test_hdf5.TestAxesConfiguration method) test_axis_by_str() (hyperspy.tests.signal.test_tools.Test2D method) test_background_remove_gaussian() (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DGaussian method) test_background_remove_gaussian_full_fit() (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DGaussian method) test_background_remove_pl() (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DPowerLaw method) test_background_remove_pl_int() (hyperspy.tests.signal.test_remove_background.TestRemoveBackground1DPowerLaw method) test_background_substraction() (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) test_base_to_1d() (hyperspy.tests.signal.test_assign_subclass.TestConvertBaseSignal method) test_base_to_2d() (hyperspy.tests.signal.test_assign_subclass.TestConvertBaseSignal method) test_base_to_complex() (hyperspy.tests.signal.test_assign_subclass.TestConvertBaseSignal method) test_basesignal_signal_dimension() (in module hyperspy.tests.signal.test_attributes) test_beam_energy() (hyperspy.tests.signal.test_eds_sem.Test_energy_units method) test_bethe_sum_rule() (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) test_BIC() (hyperspy.tests.model.test_model_selection_criteria.TestModelSelection method) test_binary_string() (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) test_binned() (hyperspy.tests.signal.test_binned.TestModelBinned method) (hyperspy.tests.signal.test_eels.TestPowerLawExtrapolation method) test_both_binned() (hyperspy.tests.model.test_components.TestScalableFixedPattern method) test_both_unbinned() (hyperspy.tests.model.test_components.TestScalableFixedPattern method) test_bounded_snapping() (hyperspy.tests.model.test_model.TestMultifit method) test_broadcast_in_place() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_broadcast_in_place_missing_sig_wrong() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_broadcast_missing_sig() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_broadcast_missing_sig_and_nav() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_calculating_convolution_axis() (hyperspy.tests.model.test_model.TestModel1D method) test_calibrate_energy_offset() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_calibrate_energy_resolution() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_calibrate_energy_scale() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_calibrate_xray_energy() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_calibrate_xray_weight() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_calibrate_xray_width() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_call() (hyperspy.tests.model.test_component.TestCallMethods method) test_call_method_binned() (hyperspy.tests.model.test_model.TestModelCallMethod method) test_call_method_no_convolutions() (hyperspy.tests.model.test_model.TestModelCallMethod method) test_call_method_with_convolutions() (hyperspy.tests.model.test_model.TestModelCallMethod method) test_chained_interactive() (hyperspy.tests.test_interactive.TestInteractive method) test_change_strategy() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_changing_tolerance() (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestRedChisq method) test_chisq() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) (hyperspy.tests.model.test_model.TestModelWeighted method) test_chisq_in_range() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_chisq_with_fit() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_chisq_with_inactive_components() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_circle_spec() (hyperspy.tests.utils.test_roi.TestROIs method) test_clean() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_complex() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_complex_image() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_complex_spectrum() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_complex_to_complex1d() (hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal method) test_complex_to_complex2d() (hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal method) test_complex_to_dielectric_function() (hyperspy.tests.signal.test_assign_subclass.TestConvertComplexSignal1D method) test_component_already_in_model() (hyperspy.tests.model.test_model.TestModel1D method) test_component_copying_order() (hyperspy.tests.model.test_fancy_indexing.TestModelIndexing method) test_component_name_when_append() (hyperspy.tests.model.test_model.TestModel1D method) test_component_not_in_model() (hyperspy.tests.model.test_fit_component.TestFitOneComponent method) test_components_class_change_invalid_name() (hyperspy.tests.model.test_model.TestModel1D method) test_components_class_change_name() (hyperspy.tests.model.test_model.TestModel1D method) test_components_class_change_name_del_default() (hyperspy.tests.model.test_model.TestModel1D method) test_components_class_default() (hyperspy.tests.model.test_model.TestModel1D method) test_compression_opts() (hyperspy.tests.io.test_hdf5.TestPassingArgs method) test_connect_disconnect() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_connected_and_disconnect() (hyperspy.tests.test_events.TestEventsSignatures method) test_consistency() (hyperspy.tests.mva.test_decomposition.TestNdAxes method) test_consistency_poissonian() (hyperspy.tests.mva.test_decomposition.TestNdAxes method) test_constant_sigma() (hyperspy.tests.signal.test_apply_function.TestImage method) (hyperspy.tests.signal.test_apply_function.TestSignal1D method) test_constant_sigma_navdim0() (hyperspy.tests.signal.test_apply_function.TestImage method) test_content() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) test_create_eelsmodel() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_create_model() (hyperspy.tests.model.test_model.TestCreateModel method) test_create_worker_defaults() (in module hyperspy.tests.samfire.test_samfire) test_crop_float() (hyperspy.tests.signal.test_tools.Test2D method) test_crop_int() (hyperspy.tests.signal.test_tools.Test2D method) test_crop_left() (hyperspy.tests.signal.test_1D_tools.TestShift1D method) test_crop_notes() (in module hyperspy.tests.io.test_blockfile) test_crop_right() (hyperspy.tests.signal.test_1D_tools.TestShift1D method) test_cythonization() (in module hyperspy.tests.misc.test_cython) test_d2s_array1() (in module hyperspy.tests.misc.test_arraytools) test_d2s_array2() (in module hyperspy.tests.misc.test_arraytools) test_d2s_arrayX() (in module hyperspy.tests.misc.test_arraytools) test_d2s_dtype() (in module hyperspy.tests.misc.test_arraytools) test_d2s_extra_dict_ok() (in module hyperspy.tests.misc.test_arraytools) test_d2s_fail() (in module hyperspy.tests.misc.test_arraytools) test_d2s_partial_sarray() (in module hyperspy.tests.misc.test_arraytools) test_d2s_sarray() (in module hyperspy.tests.misc.test_arraytools) test_d2s_string_cut() (in module hyperspy.tests.misc.test_arraytools) test_d2s_type_cast_invalid() (in module hyperspy.tests.misc.test_arraytools) test_d2s_type_cast_ok() (in module hyperspy.tests.misc.test_arraytools) test_data() (hyperspy.tests.io.test_hdf5.Example1 method) (hyperspy.tests.io.test_msa.TestExample1 method) (hyperspy.tests.io.test_msa.TestExample2 method) (hyperspy.tests.mva.test_decomposition.TestGetExplainedVarinaceRatio method) test_decomposition_not_supported() (hyperspy.tests.mva.test_decomposition.TestReturnInfo method) test_decomposition_supported_return_false() (hyperspy.tests.mva.test_decomposition.TestReturnInfo method) test_decomposition_supported_return_true() (hyperspy.tests.mva.test_decomposition.TestReturnInfo method) test_deepcopy() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) (hyperspy.tests.test_events.TestTriggerArgResolution method) test_deepcopy_on_trait_change() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_default() (hyperspy.tests.mva.test_rpca.TestORPCA method) (hyperspy.tests.mva.test_rpca.TestRPCA method) test_default_header() (in module hyperspy.tests.io.test_blockfile) test_default_init() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_default_navigation_max() (hyperspy.tests.signal.test_tools.Test3D method) test_default_navigation_mean() (hyperspy.tests.signal.test_tools.Test3D method) test_default_navigation_min() (hyperspy.tests.signal.test_tools.Test3D method) test_default_navigation_std() (hyperspy.tests.signal.test_tools.Test3D method) test_default_navigation_sum() (hyperspy.tests.signal.test_tools.Test3D method) test_default_navigation_var() (hyperspy.tests.signal.test_tools.Test3D method) test_default_param() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_default_value() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_delete_component_by_index() (hyperspy.tests.model.test_model.TestModel1D method) test_delete_component_by_name() (hyperspy.tests.model.test_model.TestModel1D method) test_delete_slice() (hyperspy.tests.model.test_model.TestModel1D method) test_delta_float() (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) test_delta_int() (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) test_density_of_mixture() (in module hyperspy.tests.utils.test_material) test_derivative() (hyperspy.tests.signal.test_tools.TestOutArg method) test_derivative_data() (hyperspy.tests.signal.test_tools.TestDerivative method) test_df_given_n() (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) test_df_given_thickness() (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) test_dielectric_function() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_dielectric_function_binned_default() (in module hyperspy.tests.signal.test_binned) test_diff() (hyperspy.tests.signal.test_tools.TestOutArg method) test_diff_axes_string_with_mask() (hyperspy.tests.mva.test_bss.TestBSS2D method) test_diff_axes_string_without_mask() (hyperspy.tests.mva.test_bss.TestBSS2D method) test_diff_axes_without_mask() (hyperspy.tests.mva.test_bss.TestBSS2D method) test_diff_axis() (hyperspy.tests.signal.test_tools.Test4D method) test_diff_data() (hyperspy.tests.signal.test_tools.Test4D method) test_different_x_y_scale_units() (in module hyperspy.tests.io.test_blockfile) test_dimension_when_indexing() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_dimension_when_slicing() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_disable_adjust_position() (hyperspy.tests.model.test_model.TestAdjustPosition method) test_disable_pixel_switching() (hyperspy.tests.model.test_component.TestMultidimensionalActive method) test_disable_pixel_switching_current_off() (hyperspy.tests.model.test_component.TestMultidimensionalActive method) test_disable_pixel_switching_current_on() (hyperspy.tests.model.test_component.TestMultidimensionalActive method) test_dof_with_fit() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_dof_with_inactive_components() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_dof_with_p0() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_dtb_settattr() (hyperspy.tests.utils.test_attrsetter.TestAttrSetter method) test_dtypes() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) test_dummy() (hyperspy.tests.utils.test_attrsetter.TestAttrSetter method) Test_eds_markers (class in hyperspy.tests.signal.test_eds_tem) test_eds_sem_binned_default() (in module hyperspy.tests.signal.test_binned) test_eds_tem_binned_default() (in module hyperspy.tests.signal.test_binned) test_edsmodel_store() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_edx_cross_section_to_zeta() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) test_eels_signal_dimension() (in module hyperspy.tests.signal.test_attributes) test_eels_signal_type() (in module hyperspy.tests.signal.test_attributes) test_eels_spectrum() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_eels_spectrum_binned_default() (in module hyperspy.tests.signal.test_binned) test_eelsdb_eels() (in module hyperspy.tests.datasets.test_eelsdb) test_eelsdb_xas() (in module hyperspy.tests.datasets.test_eelsdb) test_electron_range() (hyperspy.tests.signal.test_eds_sem.Test_tools_bulk method) test_ellipsis_navigation() (hyperspy.tests.signal.test_fancy_indexing.TestEllipsis method) test_ellipsis_navigation2() (hyperspy.tests.signal.test_fancy_indexing.TestEllipsis method) test_empty_things() (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) test_enable_adjust_position() (hyperspy.tests.model.test_model.TestAdjustPosition method) test_enable_all() (hyperspy.tests.model.test_model.TestAdjustPosition method) test_enable_all_zero_start() (hyperspy.tests.model.test_model.TestAdjustPosition method) test_enable_pixel_switching_current_off() (hyperspy.tests.model.test_component.TestMultidimensionalActive method) test_enable_pixel_switching_current_on() (hyperspy.tests.model.test_component.TestMultidimensionalActive method) Test_energy_units (class in hyperspy.tests.signal.test_eds_sem) test_equal_naxes_diff_shape() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_errfunc() (hyperspy.tests.model.test_model.TestModel1D method) test_errfunc2() (hyperspy.tests.model.test_model.TestModel1D method) Test_Estimate_Elastic_Scattering_Threshold (class in hyperspy.tests.signal.test_eels) test_estimate_integration_windows() (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) test_estimate_parameters_binned() (hyperspy.tests.model.test_components.TestGaussian method) (hyperspy.tests.model.test_components.TestOffset method) (hyperspy.tests.model.test_components.TestPolynomial method) (hyperspy.tests.model.test_components.TestPowerLaw method) (in module hyperspy.tests.component.test_gaussianhf) test_estimate_parameters_binned_only_current() (hyperspy.tests.model.test_components.TestPowerLaw method) test_estimate_parameters_unbinned() (hyperspy.tests.model.test_components.TestGaussian method) (hyperspy.tests.model.test_components.TestOffset method) (hyperspy.tests.model.test_components.TestPolynomial method) (hyperspy.tests.model.test_components.TestPowerLaw method) test_estimate_parameters_unbinned_only_current() (hyperspy.tests.model.test_components.TestPowerLaw method) test_estimate_poissonian_noise_copy_data() (hyperspy.tests.signal.test_tools.Test2D method) test_estimate_poissonian_noise_noarg() (hyperspy.tests.signal.test_tools.Test2D method) test_estimate_poissonian_noise_with_args() (hyperspy.tests.signal.test_tools.Test2D method) test_estimate_shift() (hyperspy.tests.signal.test_1D_tools.TestAlignTools method) (hyperspy.tests.signal.test_2D_tools.TestAlignTools method) test_estimate_zero_loss_peak_centre() (hyperspy.tests.signal.test_eels.TestEstimateZLPCentre method) test_eV() (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) test_events_container_magic_attributes() (in module hyperspy.tests.test_events) test_exception_event() (hyperspy.tests.test_events.TestEventsSuppression method) test_exception_events() (hyperspy.tests.test_events.TestEventsSuppression method) test_exception_nested() (hyperspy.tests.test_events.TestEventsSuppression method) test_exception_single() (hyperspy.tests.test_events.TestEventsSuppression method) test_export_all_no_twins() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_export_all_twins() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_export_free() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_ext_force_positive() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_extend() (hyperspy.tests.samfire.test_strategy_list.TestStrategyList method) test_f() (hyperspy.tests.model.test_components.TestExpression method) test_fast_bcf() (in module hyperspy.tests.io.test_bcf) test_fetch_from_array() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetch_from_array_free() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetch_only_fixed_false() (hyperspy.tests.model.test_model.TestMultifit method) test_fetch_only_fixed_true() (hyperspy.tests.model.test_model.TestMultifit method) test_fetch_stored_values_all() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetch_stored_values_all_twinned() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetch_stored_values_all_twinned_bad() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetch_stored_values_fixed() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_fetching_from_p0() (hyperspy.tests.model.test_model.TestModelSettingPZero method) test_find_peaks1D_ohaver_high_amp_thres() (hyperspy.tests.signal.test_find_peaks1D_ohaver.TestFindPeaks1DOhaver method) test_find_peaks1D_ohaver_zero_value_bug() (hyperspy.tests.signal.test_find_peaks1D_ohaver.TestFindPeaks1DOhaver method) test_fit() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_fit_background_B_C() (hyperspy.tests.model.test_eelsmodel.TestFitBackground method) test_fit_background_C() (hyperspy.tests.model.test_eelsmodel.TestFitBackground method) test_fit_background_no_edge() (hyperspy.tests.model.test_eelsmodel.TestFitBackground method) test_fit_bounded() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_bounded_bad_starting_values() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_component() (hyperspy.tests.model.test_fit_component.TestFitOneComponent method) test_fit_component_active_state() (hyperspy.tests.model.test_fit_component.TestFitSeveralComponent method) test_fit_component_free_state() (hyperspy.tests.model.test_fit_component.TestFitSeveralComponent method) test_fit_fmin_binned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_fmin_leastsq() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_fmin_ml() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_fmin_unbinned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_leastsq() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_leastsq_binned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_leastsq_grad() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_leastsq_unbinned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_mpfit() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_mpfit_binned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_mpfit_grad() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_mpfit_unbinned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_multiple_component() (hyperspy.tests.model.test_fit_component.TestFitSeveralComponent method) test_fit_odr() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_odr_binned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fit_odr_grad() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_fit_odr_unbinned() (hyperspy.tests.model.test_model.TestModelWeighted method) test_fitting() (hyperspy.tests.model.test_model.TestModel2D method) test_float_both() (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) test_float_end() (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) test_float_index() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_float_start() (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) test_float_step() (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) test_float_values() (hyperspy.tests.model.test_components.TestHeavisideStep method) test_full_range() (hyperspy.tests.signal.test_1D_tools.TestEstimatePeakWidth method) test_function() (hyperspy.tests.samfire.test_red_chisq_weight.Test_Red_chisq_weight method) (in module hyperspy.tests.component.test_gaussianhf) test_general_type_not_working() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) test_get_amplitude() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_get_bss_factor() (hyperspy.tests.mva.test_export.TestMVAExport method) test_get_bss_loadings() (hyperspy.tests.mva.test_export.TestMVAExport method) test_get_calibration_from() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_get_component_by_component() (hyperspy.tests.model.test_model.TestModel1D method) test_get_component_by_index() (hyperspy.tests.model.test_model.TestModel1D method) test_get_component_by_name() (hyperspy.tests.model.test_model.TestModel1D method) test_get_component_wrong() (hyperspy.tests.model.test_model.TestModel1D method) test_get_data() (hyperspy.tests.drawing.test_marker.Test_markers method) test_get_data_array() (hyperspy.tests.drawing.test_marker.Test_markers method) test_get_distance_array() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_get_first_ionization_edge_energy_C() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_first_ionization_edge_energy_C_B() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_first_ionization_edge_energy_None() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_histogram() (hyperspy.tests.signal.test_tools.TestOutArg method) test_get_imag() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) Test_get_lines_intentisity (class in hyperspy.tests.signal.test_eds_sem) (class in hyperspy.tests.signal.test_eds_tem) test_get_navigation_signal_dtype() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_given_data() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_given_dtype() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_nav_dim0() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_nav_dim1() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_nav_dim2() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_nav_dim3() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_wrong_data_shape() (hyperspy.tests.signal.test_tools.Test3D method) test_get_navigation_signal_wrong_data_shape_dim0() (hyperspy.tests.signal.test_tools.Test3D method) test_get_one_string() (hyperspy.tests.drawing.test_marker.Test_markers method) test_get_phase() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_get_real() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_get_signal_signal_dtype() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_given_data() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_given_dtype() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_nav_dim0() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_nav_dim1() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_nav_dim2() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_nav_dim3() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_wrong_data_shape() (hyperspy.tests.signal.test_tools.Test3D method) test_get_signal_signal_wrong_data_shape_dim0() (hyperspy.tests.signal.test_tools.Test3D method) test_get_start_energy_above() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_start_energy_below() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_start_energy_none() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_get_unwrapped_phase_1D() (in module hyperspy.tests.signal.test_complex_signal) test_get_unwrapped_phase_2D() (in module hyperspy.tests.signal.test_complex_signal) test_get_unwrapped_phase_3D() (in module hyperspy.tests.signal.test_complex_signal) test_gos() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_grad_fwhm() (hyperspy.tests.model.test_components.TestExpression method) test_grad_height() (hyperspy.tests.model.test_components.TestExpression method) test_grad_x0() (hyperspy.tests.model.test_components.TestExpression method) test_gradient() (hyperspy.tests.model.test_components.TestPolynomial method) test_gradient_ls() (hyperspy.tests.model.test_model.TestModel1D method) test_gradient_ml() (hyperspy.tests.model.test_model.TestModel1D method) test_gradients() (hyperspy.tests.model.test_components.TestHeavisideStep method) test_guess_units_from_mode() (hyperspy.tests.io.test_fei.TestFEIReader method) test_height() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) test_histogram() (hyperspy.tests.signal.test_tools.Test2D method) test_histogram_axis_changes() (hyperspy.tests.signal.test_tools.TestOutArg method) test_hyperspy_wrap() (in module hyperspy.tests.io.test_bcf) test_hyperspy_wrap_downsampled() (in module hyperspy.tests.io.test_bcf) test_ignore_full_message() (in module hyperspy.tests.misc.test_test_utils) test_ignore_message_fails() (in module hyperspy.tests.misc.test_test_utils) test_ignore_partial_message() (in module hyperspy.tests.misc.test_test_utils) test_ignore_regex_message() (in module hyperspy.tests.misc.test_test_utils) test_ignore_type() (in module hyperspy.tests.misc.test_test_utils) test_ignore_type_fails() (in module hyperspy.tests.misc.test_test_utils) test_image_2d_loading() (in module hyperspy.tests.io.test_emd) (in module hyperspy.tests.io.test_semper_unf) test_image_binned_default() (in module hyperspy.tests.signal.test_binned) test_image_byte_loading() (in module hyperspy.tests.io.test_semper_unf) test_image_complex_loading() (in module hyperspy.tests.io.test_semper_unf) test_image_int16_loading() (in module hyperspy.tests.io.test_semper_unf) test_image_int32_loading() (in module hyperspy.tests.io.test_semper_unf) test_image_signal_dimension() (in module hyperspy.tests.signal.test_attributes) test_image_signal_type() (in module hyperspy.tests.signal.test_attributes) test_image_signal_unfolded_back_to_false() (hyperspy.tests.signal.test_tools.Test4D method) test_image_signal_unfolded_deepcopy() (hyperspy.tests.signal.test_tools.Test4D method) test_image_signal_unfolded_false() (hyperspy.tests.signal.test_tools.Test4D method) test_image_signal_unfolded_true() (hyperspy.tests.signal.test_tools.Test4D method) test_in_between() (hyperspy.tests.signal.test_fancy_indexing.TestEllipsis method) test_inav() (hyperspy.tests.signal.test_tools.TestOutArg method) test_inav_variance() (hyperspy.tests.signal.test_tools.TestOutArg method) test_index() (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestInformationCriteria method) (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestRedChisq method) (hyperspy.tests.signal.test_fancy_indexing.Test1D method) (hyperspy.tests.signal.test_fancy_indexing.Test2D method) test_index_changed_event() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_indexmax() (hyperspy.tests.signal.test_tools.Test3D method) (hyperspy.tests.signal.test_tools.TestOutArg method) test_inherit_connections() (hyperspy.tests.model.test_parameter.TestParameterTwin method) test_init() (hyperspy.tests.mva.test_rpca.TestORPCA method) (hyperspy.tests.samfire.test_histogram_segmenter.TestHistogramSegmenter method) test_inside_things() (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) test_integer_values() (hyperspy.tests.model.test_components.TestHeavisideStep method) test_integral_as_signal() (in module hyperspy.tests.component.test_gaussianhf) test_integrate1D() (hyperspy.tests.signal.test_tools.TestOutArg method) test_integrate_in_range() (hyperspy.tests.signal.test_integrate_in_range.Test1D method) test_integrate_simpson() (hyperspy.tests.signal.test_tools.TestOutArg method) test_intensity() (hyperspy.tests.signal.test_eds_tem.Test_simple_model method) test_intensity_dtype_uint() (hyperspy.tests.signal.test_eds_tem.Test_simple_model method) test_interactive() (hyperspy.tests.utils.test_roi.TestInteractive method) test_interactive_special_case() (hyperspy.tests.utils.test_roi.TestInteractive method) test_interactive_sum() (hyperspy.tests.test_interactive.TestInteractive method) test_interactive_sum_auto_event() (hyperspy.tests.test_interactive.TestInteractive method) test_interactive_sum_no_out() (hyperspy.tests.test_interactive.TestInteractive method) test_invalid_component_name() (hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary method) test_invalid_name() (hyperspy.tests.model.test_model_as_dictionary.TestParameterDictionary method) test_invalid_parameter_name() (hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary method) test_invert() (hyperspy.tests.signal.test_signal_operators.TestUnaryOperators method) test_is_tuple() (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_isfloat_float() (in module hyperspy.tests.misc.test_math_tools) test_isfloat_int() (in module hyperspy.tests.misc.test_math_tools) test_isfloat_npfloat() (in module hyperspy.tests.misc.test_math_tools) test_isfloat_npint() (in module hyperspy.tests.misc.test_math_tools) test_isig() (hyperspy.tests.signal.test_tools.TestOutArg method) test_isig_variance() (hyperspy.tests.signal.test_tools.TestOutArg method) test_iter() (hyperspy.tests.mva.test_rpca.TestRPCA method) test_iterate_strings() (hyperspy.tests.drawing.test_marker.Test_markers method) test_jacobian_convolved() (hyperspy.tests.model.test_model.TestModelJacobians method) test_jacobian_not_convolved() (hyperspy.tests.model.test_model.TestModelJacobians method) test_line_energy() (hyperspy.tests.signal.test_eds_sem.Test_energy_units method) test_lines_intensity() (hyperspy.tests.model.test_edsmodel.TestMaps method) test_linfit() (in module hyperspy.external.mpfit.test_mpfit) test_load1() (in module hyperspy.tests.io.test_blockfile) test_load2() (in module hyperspy.tests.io.test_blockfile) test_load_16bit() (in module hyperspy.tests.io.test_bcf) test_load_16bit_reduced() (in module hyperspy.tests.io.test_bcf) test_load_8bit() (in module hyperspy.tests.io.test_bcf) test_load_acquire() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_dictionary() (hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestModelDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestParameterDictionary method) test_load_diffraction_area_scan() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_diffraction_line_scan() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_diffraction_point() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_emi_old_new_format() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_image_content() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_inplace() (in module hyperspy.tests.io.test_blockfile) test_load_memmap() (in module hyperspy.tests.io.test_blockfile) test_load_readonly() (in module hyperspy.tests.io.test_blockfile) test_load_search() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_ser_reader_old_new_format() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_spectrum_area_scan() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_spectrum_area_scan_not_square() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_spectrum_line_scan() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_spectrum_point() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_stack_image_preview() (hyperspy.tests.io.test_fei.TestFEIReader method) test_load_stackbuilder_imagestack() (hyperspy.tests.io.test_dm_stackbuilder_plugin.TestStackBuilder method) test_load_to_memory() (in module hyperspy.tests.io.test_blockfile) test_load_units_scale() (hyperspy.tests.io.test_fei.TestFEIReader method) test_loading() (in module hyperspy.tests.io.test_dm3) (in module hyperspy.tests.io.test_dm4) test_low_loss() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_low_loss_bad_shape() (hyperspy.tests.model.test_eelsmodel.TestCreateEELSModel method) test_lowess() (hyperspy.tests.signal.test_1D_tools.TestSmoothing method) test_mac() (in module hyperspy.tests.utils.test_material) test_main_result() (hyperspy.tests.samfire.test_samfire.TestSamfireWorker method) test_manual_add_line() (hyperspy.tests.signal.test_eds_tem.Test_eds_markers method) test_manual_close() (hyperspy.tests.model.test_model.TestAdjustPosition method) test_manual_remove_element() (hyperspy.tests.signal.test_eds_tem.Test_eds_markers method) test_map() (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestInformationCriteria method) (hyperspy.tests.samfire.test_goodness_of_fit_tests.TestRedChisq method) test_map_noslice() (hyperspy.tests.samfire.test_red_chisq_weight.Test_Red_chisq_weight method) test_map_size0() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_map_size1() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_map_size2() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) Test_markers (class in hyperspy.tests.drawing.test_marker) test_markers_properties() (hyperspy.tests.drawing.test_marker.Test_markers method) test_mask_diff_order_0() (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) test_mask_diff_order_0_on_loadings() (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) test_mask_diff_order_1() (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) test_mask_diff_order_1_diff_axes() (hyperspy.tests.mva.test_bss.TestBSS2D method) test_mask_diff_order_1_on_loadings() (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) test_mask_diff_order_1_on_loadings_diff_axes() (hyperspy.tests.mva.test_bss.TestBSS2D method) test_masked_array_mean() (hyperspy.tests.signal.test_tools.TestOutArg method) test_masked_array_sum() (hyperspy.tests.signal.test_tools.TestOutArg method) test_masked_arrays_out() (hyperspy.tests.signal.test_tools.TestOutArg method) test_max() (hyperspy.tests.signal.test_tools.TestOutArg method) test_maxpeaksn() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) test_mean() (hyperspy.tests.signal.test_tools.TestOutArg method) Test_metadata (class in hyperspy.tests.signal.test_eds_sem) (class in hyperspy.tests.signal.test_eds_tem) test_metadata() (in module hyperspy.tests.io.test_emd) test_method_BCD() (hyperspy.tests.mva.test_rpca.TestORPCA method) test_method_SGD() (hyperspy.tests.mva.test_rpca.TestORPCA method) test_min() (hyperspy.tests.signal.test_tools.TestOutArg method) test_min_in_window_with_smoothing() (hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold method) test_min_in_window_without_smoothing() (hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold method) test_min_in_window_without_smoothing_single_spectrum() (hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold method) test_min_not_in_window() (hyperspy.tests.signal.test_eels.Test_Estimate_Elastic_Scattering_Threshold method) test_minus() (hyperspy.tests.signal.test_signal_operators.TestUnaryOperators method) test_minus_one_index() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_mixture_mac() (in module hyperspy.tests.utils.test_material) test_model2plot_other_am() (hyperspy.tests.model.test_model.TestModelPlotCall method) test_model2plot_own_am() (hyperspy.tests.model.test_model.TestModelPlotCall method) test_model_class() (hyperspy.tests.model.test_fancy_indexing.TestModelIndexingClass method) test_model_creation() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_model_function() (hyperspy.tests.model.test_model.TestModel1D method) test_model_navigation_indexer_slice() (hyperspy.tests.model.test_fancy_indexing.TestModelIndexing method) test_model_signal_indexer_slice() (hyperspy.tests.model.test_fancy_indexing.TestModelIndexing method) test_model_store() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_models_getattr() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_models_pop() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_models_restore_remove() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_models_stub_methods() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_most_frequent() (hyperspy.tests.samfire.test_histogram_segmenter.TestHistogramSegmenter method) test_multi_dim() (hyperspy.tests.utils.test_material.TestWeightToFromAtomic method) test_multiprocessed() (hyperspy.tests.samfire.test_samfire.TestSamfireMain method) test_n_peaks() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) test_name() (hyperspy.tests.model.test_components.TestExpression method) test_nans() (hyperspy.tests.misc.test_image_tools.TestImageStretching method) test_navigation_indexer_navdim0() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_navigation_indexer_signal_dim0() (hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0 method) test_navigation_indexer_slice_variance_float() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_navigation_indexer_slice_variance_signal() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_nearest_indices_cent1() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_cent2() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_cent3() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_cent4() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_ind1() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_ind2() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_ind3() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_ind4() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_nearest_indices_ind5() (hyperspy.tests.samfire.test_utils.TestSamfireUtils method) test_negative_float_step() (hyperspy.tests.signal.test_fancy_indexing.TestFloatArguments method) test_next_pixels() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_no_component_with_that_name() (hyperspy.tests.model.test_model.TestModel1D method) test_no_evr() (hyperspy.tests.mva.test_decomposition.TestGetExplainedVarinaceRatio method) test_no_label_loading() (in module hyperspy.tests.io.test_semper_unf) test_no_nans() (hyperspy.tests.misc.test_image_tools.TestImageStretching method) test_non_square() (in module hyperspy.tests.io.test_blockfile) test_none_metadata() (in module hyperspy.tests.io.test_hdf5) test_normalize_bss_factors() (hyperspy.tests.mva.test_decomposition.TestNormalizeComponents method) test_normalize_bss_loadings() (hyperspy.tests.mva.test_decomposition.TestNormalizeComponents method) test_normalize_decomposition_factors() (hyperspy.tests.mva.test_decomposition.TestNormalizeComponents method) test_normalize_decomposition_loadings() (hyperspy.tests.mva.test_decomposition.TestNormalizeComponents method) test_not_active() (hyperspy.tests.model.test_model.TestStoreCurrentValues method) test_not_connected() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_not_sorted() (hyperspy.tests.model.test_components.TestHeavisideStep method) test_notebook_interactions() (hyperspy.tests.model.test_model.TestModel1D method) test_number_of_elements() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_numpy_func() (hyperspy.tests.signal.test_tools.Test2D method) test_numpy_general_type() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method)

test_numpy_only_inner_lists() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) test_numpy_unfunc_one_arg_titled() (hyperspy.tests.signal.test_tools.Test2D method) test_numpy_unfunc_one_arg_untitled() (hyperspy.tests.signal.test_tools.Test2D method) test_numpy_unfunc_two_arg_titled() (hyperspy.tests.signal.test_tools.Test2D method) test_numpy_unfunc_two_arg_untitled() (hyperspy.tests.signal.test_tools.Test2D method) test_on_loadings() (hyperspy.tests.mva.test_bss.TestBSS1D method) (hyperspy.tests.mva.test_bss.TestBSS2D method) test_one_component_multidim() (hyperspy.tests.model.test_model.TestAsSignal method) test_one_component_simple() (hyperspy.tests.model.test_model.TestAsSignal method) test_oom_loading() (hyperspy.tests.io.test_hdf5.TestLoadingOOMReadOnly method) test_optional_components() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_original_metadata() (hyperspy.tests.io.test_hdf5.Example1 method) test_out() (hyperspy.tests.utils.test_roi.TestInteractive method) test_out_of_range() (hyperspy.tests.misc.test_image_tools.TestImageStretching method) test_out_special_case() (hyperspy.tests.utils.test_roi.TestInteractive method) test_package_values() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) test_parameter_as_signal_values() (hyperspy.tests.model.test_model.TestMultifit method) test_parameters() (hyperspy.tests.io.test_msa.TestExample1 method) (hyperspy.tests.io.test_msa.TestExample2 method) test_partial() (hyperspy.tests.signal.test_fancy_indexing.Test2D method) test_pattern_binned_signal_unbinned() (hyperspy.tests.model.test_components.TestScalableFixedPattern method) test_pattern_unbinned_signal_binned() (hyperspy.tests.model.test_components.TestScalableFixedPattern method) test_plot_auto_add() (hyperspy.tests.signal.test_eds_tem.Test_eds_markers method) test_plotting_active_component_binned() (hyperspy.tests.model.test_component.TestCallMethods method) test_plotting_active_component_notbinned() (hyperspy.tests.model.test_component.TestCallMethods method) test_plotting_active_component_out_of_range() (hyperspy.tests.model.test_component.TestCallMethods method) test_plotting_not_active_component() (hyperspy.tests.model.test_component.TestCallMethods method) test_plus() (hyperspy.tests.signal.test_signal_operators.TestUnaryOperators method) test_point1d_image() (hyperspy.tests.utils.test_roi.TestROIs method) test_point1d_spectrum() (hyperspy.tests.utils.test_roi.TestROIs method) test_point1d_spectrum_ronded_coord() (hyperspy.tests.utils.test_roi.TestROIs method) test_point2d_image() (hyperspy.tests.utils.test_roi.TestROIs method) test_point2d_image_sig() (hyperspy.tests.utils.test_roi.TestROIs method) test_position() (hyperspy.tests.model.test_components.TestExpression method) test_power() (hyperspy.tests.mva.test_rpca.TestRPCA method) test_print_summary() (hyperspy.tests.signal.test_tools.Test2D method) test_quant_cross_section() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) test_quant_lorimer() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) test_quant_zeros() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) test_quant_zeta() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) Test_quantification (class in hyperspy.tests.signal.test_eds_tem) test_radii() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_read1() (in module hyperspy.tests.io.test_dens) test_read2() (in module hyperspy.tests.io.test_dens) test_read3() (in module hyperspy.tests.io.test_dens) test_read_BW_Zeiss_optical_scale_metadata() (in module hyperspy.tests.io.test_tiff) test_read_BW_Zeiss_optical_scale_metadata2() (in module hyperspy.tests.io.test_tiff) test_read_BW_Zeiss_optical_scale_metadata3() (in module hyperspy.tests.io.test_tiff) test_read_FEI_SEM_scale_metadata_16bits() (in module hyperspy.tests.io.test_tiff) test_read_FEI_SEM_scale_metadata_8bits() (in module hyperspy.tests.io.test_tiff) test_read_RGB_Zeiss_optical_scale_metadata() (in module hyperspy.tests.io.test_tiff) test_read_STEM_TEM_mode() (hyperspy.tests.io.test_fei.TestFEIReader method) test_read_unit_from_dm() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_dm_local_tifffile() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_DM_stack() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_imagej() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_imagej_local_tifffile() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_imagej_no_scale() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_imagej_stack() (in module hyperspy.tests.io.test_tiff) test_read_unit_from_imagej_stack_no_scale() (in module hyperspy.tests.io.test_tiff) test_read_unit_um() (in module hyperspy.tests.io.test_tiff) test_read_Zeiss_SEM_scale_metadata_1k_image() (in module hyperspy.tests.io.test_tiff) test_read_Zeiss_SEM_scale_metadata_512_image() (in module hyperspy.tests.io.test_tiff) test_rebin() (hyperspy.tests.signal.test_tools.Test3D method) (hyperspy.tests.signal.test_tools.TestOutArg method) test_rebin_const_variance() (hyperspy.tests.signal.test_tools.Test3D method) test_rebin_live_time() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_rebin_no_variance() (hyperspy.tests.signal.test_tools.Test3D method) test_recompute() (hyperspy.tests.test_interactive.TestInteractive method) test_recompute_auto_recompute() (hyperspy.tests.test_interactive.TestInteractive method) test_rect_image() (hyperspy.tests.utils.test_roi.TestROIs method) test_red_chisq() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) (hyperspy.tests.model.test_model.TestModelWeighted method) Test_Red_chisq_weight (class in hyperspy.tests.samfire.test_red_chisq_weight) test_red_chisq_with_fit() (hyperspy.tests.model.test_chi_squared.TestChiSquared method) test_refresh_nooverwrite() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_refresh_nooverwrite_given() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) test_refresh_nooverwrite_nogiven() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) test_refresh_overwrite() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_refresh_overwrite_given() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) test_refresh_overwrite_nogiven() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) test_regular_array2rgbx_corder_from_c() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_regular_array2rgbx_corder_from_c_slices() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_regular_array2rgbx_corder_from_f() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_regular_array2rgbx_cordermask_from_cmasked() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_regular_array2rgbx_cordermask_from_cmasked_slices() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_regularization() (hyperspy.tests.mva.test_rpca.TestORPCA method) (hyperspy.tests.mva.test_rpca.TestRPCA method) test_remove_axis() (hyperspy.tests.signal.test_signal_subclass_conversion.Test3d method) test_remove_component() (hyperspy.tests.model.test_model.TestModel1D method) test_remove_component_by_index() (hyperspy.tests.model.test_model.TestModel1D method) test_remove_component_by_name() (hyperspy.tests.model.test_model.TestModel1D method) test_remove_int() (hyperspy.tests.samfire.test_strategy_list.TestStrategyList method) test_remove_object() (hyperspy.tests.samfire.test_strategy_list.TestStrategyList method) test_reprs() (hyperspy.tests.axes.test_axes_manager.TestAxesManager method) test_resume_fsw() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_reversal_factors_multiple_components_not_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_factors_multiple_components_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_factors_one_component_not_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_factors_one_component_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_loadings_multiple_components_not_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_loadings_multiple_components_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_loadings_one_component_not_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reversal_loadings_one_component_reversed() (hyperspy.tests.mva.test_decomposition.TestReverseDecompositionComponent method) test_reverse_slice() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_rgba16() (in module hyperspy.tests.io.test_hdf5) (in module hyperspy.tests.io.test_tiff) test_rgba16_local_tifffile() (in module hyperspy.tests.io.test_tiff) test_rgbx2regular_array_corder_from_c() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_rgbx2regular_array_corder_from_c_slices() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_rgbx2regular_array_corder_from_f() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_rgbx2regular_array_cordermask_from_cmasked() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_rgbx2regular_array_cordermask_from_cmasked_slices() (hyperspy.tests.misc.test_rgbtools.TestRGBTools method) test_ripple() (in module hyperspy.tests.io.test_ripple) test_rollaxis_int() (hyperspy.tests.signal.test_tools.Test4D method) test_rollaxis_str() (hyperspy.tests.signal.test_tools.Test4D method) test_rosenbrock() (in module hyperspy.external.mpfit.test_mpfit) test_s2EELS2im2s() (hyperspy.tests.signal.test_signal_subclass_conversion.Test2d method) test_samf_weight_setters() (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_samfire_init_default() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_fig() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_marker() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_metadata() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_model() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_strategies() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_samfire_init_strategy_list() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_save_and_load_model() (hyperspy.tests.model.test_model_storing.TestModelSaving method) test_save_and_read() (hyperspy.tests.io.test_emd.TestCaseSaveAndRead method) (hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadByte method) (hyperspy.tests.io.test_semper_unf.TestCaseSaveAndReadImage method) test_save_load_cycle() (in module hyperspy.tests.io.test_blockfile) test_save_long_list() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) test_save_unicode() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) test_savgol() (hyperspy.tests.signal.test_1D_tools.TestSmoothing method) test_saving_loading_stack_no_scale() (in module hyperspy.tests.io.test_tiff) test_saving_with_custom_tag() (in module hyperspy.tests.io.test_tiff) test_SEM_to_TEM() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) test_semmodel_creation() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_semmodel_store() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_set_1() (hyperspy.tests.model.test_model.TestSetCurrentValuesTo method) test_set_active_value1() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_active_value2() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_active_value3() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_all() (hyperspy.tests.model.test_model.TestSetCurrentValuesTo method) test_set_amplitude() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_set_EELS() (hyperspy.tests.signal.test_signal_subclass_conversion.Test1d method) test_set_get_data() (hyperspy.tests.drawing.test_marker.Test_markers method) test_set_imag() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_set_parameter_in_model1() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model2() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model3() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model4() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model5() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model_free() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_in_model_not_free() (hyperspy.tests.model.test_set_parameter_state.TestSetParameterInModel method) test_set_parameter_value1() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_parameter_value2() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_parameter_value3() (hyperspy.tests.model.test_set_parameter_value.TestSetParameterInModel method) test_set_parameters_free1() (hyperspy.tests.component.test_component_set_parameters.TestSetParameters method) test_set_parameters_free2() (hyperspy.tests.component.test_component_set_parameters.TestSetParameters method) test_set_parameters_free_all() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_set_parameters_free_name() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_set_parameters_not_free1() (hyperspy.tests.component.test_component_set_parameters.TestSetParameters method) test_set_parameters_not_free2() (hyperspy.tests.component.test_component_set_parameters.TestSetParameters method) test_set_parameters_not_free_all() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_set_parameters_not_free_name() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_set_phase() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_set_real() (hyperspy.tests.signal.test_complex_signal.TestComplexProperties method) test_set_value() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_set_value_bounded() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_set_value_wrong_length() (hyperspy.tests.model.test_parameter.TestParameterLen1 method) (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_set_value_wrong_length2() (hyperspy.tests.model.test_parameter.TestParameterLen2 method) test_setting_boundaries() (hyperspy.tests.model.test_model.TestModelSettingPZero method) test_setting_mpfit_parameters_info() (hyperspy.tests.model.test_model.TestModelSettingPZero method) test_setting_p0() (hyperspy.tests.model.test_model.TestModelSettingPZero method) test_setup() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_several_component_with_same_name() (hyperspy.tests.model.test_model.TestModel1D method) test_shift1D() (hyperspy.tests.signal.test_1D_tools.TestAlignTools method) test_signal() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_signal1d() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_signal1d_to_eds_sem() (hyperspy.tests.signal.test_assign_subclass.TestConvertSignal1D method) test_signal1d_to_eds_tem() (hyperspy.tests.signal.test_assign_subclass.TestConvertSignal1D method) test_signal1d_to_eels() (hyperspy.tests.signal.test_assign_subclass.TestConvertSignal1D method) test_signal2d() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_signal_3d_loading() (in module hyperspy.tests.io.test_emd) (in module hyperspy.tests.io.test_semper_unf) test_signal_binned_default() (in module hyperspy.tests.signal.test_binned) test_signal_indexer_index() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_signal_indexer_reverse_slice() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_signal_indexer_signal_dim0_idx_error1() (hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0 method) test_signal_indexer_signal_dim0_idx_error2() (hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0 method) test_signal_indexer_signal_dim0_idx_error3() (hyperspy.tests.signal.test_fancy_indexing.Test3D_SignalDim0 method) test_signal_indexer_slice() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_signal_indexer_slice_variance_float() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_signal_indexer_slice_variance_signal() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_0_and_1 method) test_signal_indexer_step2_slice() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_signal_inside() (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) test_signal_iterator() (in module hyperspy.tests.signal.test_tools) test_signal_signal_type() (in module hyperspy.tests.signal.test_attributes) test_signal_to_dictionary() (hyperspy.tests.test_dictionary_tree_browser.TestDictionaryBrowser method) Test_simple_model (class in hyperspy.tests.signal.test_eds_tem) test_simple_suppression() (hyperspy.tests.test_events.TestEventsSuppression method) test_simple_things() (hyperspy.tests.io.test_hdf5.TestLoadingNewSavedMetadata method) test_single_spectrum() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) test_single_spectrum_in_units() (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) test_slave_fixed() (hyperspy.tests.model.test_parameter.TestParameterTwin method) test_slice_me() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_slice_None() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_slice_out_of_axis() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_slice_out_of_range_interval_in_axis() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_slice_out_of_range_interval_not_in_axis() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_slicing_low_loss_inav() (hyperspy.tests.model.test_fancy_indexing.TestEELSModelSlicing method) test_slicing_low_loss_isig() (hyperspy.tests.model.test_fancy_indexing.TestEELSModelSlicing method) test_slugify() (in module hyperspy.tests.utils.test_slugify) test_snap_parameter_bounds() (hyperspy.tests.model.test_model.TestModel1D method) test_some_inactive() (hyperspy.tests.component.test_component_active_array.TestParametersAsSignals method) test_some_kwargs_resolution() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_span_spectrum_nav() (hyperspy.tests.utils.test_roi.TestROIs method) test_span_spectrum_sig() (hyperspy.tests.utils.test_roi.TestROIs method) test_spectrum_1d_loading() (in module hyperspy.tests.io.test_emd) (in module hyperspy.tests.io.test_semper_unf) test_spectrum_binned_default() (in module hyperspy.tests.signal.test_binned) test_spectrum_signal_dimension() (in module hyperspy.tests.signal.test_attributes) test_spectrum_signal_type() (in module hyperspy.tests.signal.test_attributes) test_split_axis0() (hyperspy.tests.signal.test_tools.Test2D method) test_split_axis1() (hyperspy.tests.signal.test_tools.Test2D method) test_split_axisE() (hyperspy.tests.signal.test_tools.Test2D method) test_split_default() (hyperspy.tests.signal.test_tools.Test2D method) test_stack_bigger_than_ten() (hyperspy.tests.utils.test_stack.TestUtilsStack method) test_stack_default() (hyperspy.tests.utils.test_stack.TestUtilsStack method) test_stack_not_default() (hyperspy.tests.utils.test_stack.TestUtilsStack method) test_stack_of_stack() (hyperspy.tests.utils.test_stack.TestUtilsStack method) test_stash_array() (hyperspy.tests.component.test_component_active_array.TestParametersAsSignals method) test_std() (hyperspy.tests.signal.test_tools.TestOutArg method) test_std10_chisq() (hyperspy.tests.model.test_model.TestModelScalarVariance method) test_std10_red_chisq() (hyperspy.tests.model.test_model.TestModelScalarVariance method) test_std1_chisq() (hyperspy.tests.model.test_model.TestModelScalarVariance method) test_std1_red_chisq() (hyperspy.tests.model.test_model.TestModelScalarVariance method) (hyperspy.tests.model.test_model.TestModelSignalVariance method) test_std1_red_chisq_in_range() (hyperspy.tests.model.test_model.TestModelScalarVariance method) test_step0_slice() (hyperspy.tests.signal.test_fancy_indexing.Test1D method) test_store_current_values_no_indices() (hyperspy.tests.model.test_parameter.TestGeneralMethods method) test_store_current_values_normal_indices() (hyperspy.tests.model.test_parameter.TestGeneralMethods method) test_store_name_error1() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_store_name_error2() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_store_name_error3() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_store_name_error4() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_store_name_error5() (hyperspy.tests.model.test_model_storing.TestModelStoring method) test_strings_from_py2() (in module hyperspy.tests.io.test_hdf5) test_subclass_assignment() (hyperspy.tests.signal.test_fancy_indexing.Test3D_Navigate_1 method) test_sum() (hyperspy.tests.signal.test_tools.TestOutArg method) test_sum_in_place_same_shape_signals() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_sum_in_place_same_shape_signals_not_aligned() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_sum_live_time() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) test_sum_live_time1() (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_sum_live_time2() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_sum_live_time_out_arg() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_sum_return_1d_signal() (hyperspy.tests.signal.test_tools.TestOutArg method) test_sum_same_shape_signals() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_sum_same_shape_signals_not_aligned() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_sum_wrong_shape() (hyperspy.tests.signal.test_signal_operators.TestBinaryOperators method) test_sum_x() (hyperspy.tests.signal.test_tools.Test2D method) test_sum_x_E() (hyperspy.tests.signal.test_tools.Test2D method) test_suppresion_nesting() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppress_wrong() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppression_restore() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppression_single() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppressor_add_args() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppressor_all_callback_in_events() (hyperspy.tests.test_events.TestEventsSuppression method) test_suppressor_init_args() (hyperspy.tests.test_events.TestEventsSuppression method) test_suspend_auto_fsw() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_swap_axes_iteration() (hyperspy.tests.signal.test_tools.Test3D method) test_swap_axes_simple() (hyperspy.tests.signal.test_tools.Test3D method) test_swap_dict_and_model() (hyperspy.tests.samfire.test_samfire.TestSamfireEmpty method) test_take_off_angle() (hyperspy.tests.signal.test_eds_sem.Test_metadata method) test_TEM_to_SEM() (hyperspy.tests.signal.test_eds_tem.Test_metadata method) test_temmodel_creation() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_temmodel_store() (hyperspy.tests.model.test_edsmodel.TestlineFit method) test_thickness_estimation() (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) test_thicness_input_array() (hyperspy.tests.signal.test_kramers_kronig_transform.Test2D method) test_title_length() (in module hyperspy.tests.drawing.test_figure_title) test_to_dictionary() (hyperspy.tests.model.test_model_as_dictionary.TestComponentDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestModelDictionary method) (hyperspy.tests.model.test_model_as_dictionary.TestParameterDictionary method) test_to_image() (hyperspy.tests.signal.test_image.Test4D method) test_to_signal1D() (hyperspy.tests.signal.test_image.Test2D method) (hyperspy.tests.signal.test_image.Test3D method) test_to_signal2D() (hyperspy.tests.signal.test_spectrum.Test2D method) (hyperspy.tests.signal.test_spectrum.Test3D method) (hyperspy.tests.signal.test_spectrum.Test4D method) test_tol() (hyperspy.tests.mva.test_rpca.TestRPCA method) test_too_narrow_range() (hyperspy.tests.signal.test_1D_tools.TestEstimatePeakWidth method) Test_tools_bulk (class in hyperspy.tests.signal.test_eds_sem) test_torgb() (hyperspy.tests.signal.test_rgb.TestRGBA16 method) (hyperspy.tests.signal.test_rgb.TestRGBA8 method) test_touint() (hyperspy.tests.signal.test_rgb.TestRGBA16 method) (hyperspy.tests.signal.test_rgb.TestRGBA8 method) test_training() (hyperspy.tests.mva.test_rpca.TestORPCA method) test_travis() (in module hyperspy.tests.test_travis) test_trigger_kwarg_validity() (hyperspy.tests.test_events.TestEventsSignatures method) test_tv() (hyperspy.tests.signal.test_1D_tools.TestSmoothing method) test_twin_function() (hyperspy.tests.model.test_parameter.TestParameterTwin method) test_twin_value() (hyperspy.tests.model.test_parameter.TestParameterTwin method) test_twin_value_bounded() (hyperspy.tests.model.test_parameter.TestParameterTwin method) test_two_area_powerlaw_estimation_BC() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_two_area_powerlaw_estimation_C() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_two_area_powerlaw_estimation_no_edge() (hyperspy.tests.model.test_eelsmodel.TestEELSModel method) test_two_peaks() (hyperspy.tests.signal.test_1D_tools.TestEstimatePeakWidth method) test_two_recompute_events() (hyperspy.tests.test_interactive.TestInteractive method) test_two_spectra() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) (hyperspy.tests.signal.test_1D_tools.TestInterpolateInBetween method) test_two_update_events() (hyperspy.tests.test_interactive.TestInteractive method) test_type() (hyperspy.tests.test_events.TestEventsSignatures method) test_unbinned() (hyperspy.tests.signal.test_binned.TestModelBinned method) (hyperspy.tests.signal.test_eels.TestPowerLawExtrapolation method) test_unfold_full_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfold_image() (hyperspy.tests.signal.test_tools.Test2D method) (hyperspy.tests.signal.test_tools.Test4D method) test_unfold_image_returns_true() (hyperspy.tests.signal.test_tools.Test2D method) test_unfold_navigation() (hyperspy.tests.signal.test_folding.TestSignalFolding method) (hyperspy.tests.signal.test_folding.TestSignalVarianceFolding method) test_unfold_navigation_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfold_nothing_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfold_signal() (hyperspy.tests.signal.test_folding.TestSignalFolding method) (hyperspy.tests.signal.test_folding.TestSignalVarianceFolding method) test_unfold_signal_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfold_spectrum() (hyperspy.tests.signal.test_tools.Test4D method) test_unfold_spectrum_returns_true() (hyperspy.tests.signal.test_tools.Test4D method) test_unfold_spectrum_signal_returns_false() (hyperspy.tests.signal.test_tools.Test4D method) test_unfolded_context_manager() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfolded_full_by_keywords() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfolded_navigation_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfolded_nothin_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfolded_repr() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unfolded_signal_by_keyword() (hyperspy.tests.signal.test_folding.TestSignalFolding method) test_unsupported_type() (hyperspy.tests.io.test_hdf5.TestSavingMetadataContainers method) test_update() (hyperspy.tests.samfire.test_histogram_segmenter.TestHistogramSegmenter method) test_update_from() (hyperspy.tests.axes.test_axes_manager.TestAxesManager method) (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_update_marker() (hyperspy.tests.samfire.test_strategy.TestGlobalStrategy method) (hyperspy.tests.samfire.test_strategy.TestLocalSimple method) test_update_number_free_parameters() (in module hyperspy.tests.model.test_component) test_update_number_parameters() (hyperspy.tests.model.test_component.TestGeneralMethods method) test_util_fwhm_get() (in module hyperspy.tests.component.test_gaussianhf) test_util_fwhm_getset() (in module hyperspy.tests.component.test_gaussianhf) test_util_fwhm_set() (in module hyperspy.tests.component.test_gaussianhf) test_util_sigma_get() (in module hyperspy.tests.component.test_gaussianhf) test_util_sigma_getset() (in module hyperspy.tests.component.test_gaussianhf) test_util_sigma_set() (in module hyperspy.tests.component.test_gaussianhf) Test_vacum_mask (class in hyperspy.tests.signal.test_eds_tem) test_vacuum_mask() (hyperspy.tests.signal.test_eds_tem.Test_vacum_mask method) test_value2index_array_in() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_array_in_ceil() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_array_in_floor() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_array_out() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_float_end_point_left() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_float_end_point_right() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_float_in() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value2index_float_out() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_changed_event() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_changed_event_continuous() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_range_to_indices_endpoints() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_range_to_indices_in_range() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_range_to_indices_None() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_range_to_indices_out() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_value_range_to_indices_v1_greater_than_v2() (hyperspy.tests.axes.test_data_axis.TestDataAxis method) test_valuemax() (hyperspy.tests.signal.test_tools.Test3D method) (hyperspy.tests.signal.test_tools.TestOutArg method) test_values() (hyperspy.tests.model.test_components2D.TestGaussian2D method) (hyperspy.tests.samfire.test_strategy.TestLocalWithModel method) test_var() (hyperspy.tests.signal.test_tools.TestOutArg method) test_variable_sigma() (hyperspy.tests.signal.test_apply_function.TestImage method) test_weight_to_atomic() (hyperspy.tests.utils.test_material.TestWeightToFromAtomic method) test_weird_complex() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_weird_real() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_weird_spectrum() (hyperspy.tests.signal.test_assign_subclass.TestSignalAssignSubclass method) test_width() (hyperspy.tests.signal.test_1D_tools.TestFindPeaks1D method) test_with_signals_examples() (hyperspy.tests.signal.test_eds_sem.Test_get_lines_intentisity method) (hyperspy.tests.signal.test_eds_tem.Test_get_lines_intentisity method) test_with_title_loading() (in module hyperspy.tests.io.test_semper_unf) test_write_cutoff() (in module hyperspy.tests.io.test_blockfile) test_write_data_am_mismatch() (in module hyperspy.tests.io.test_blockfile) test_write_data_line() (in module hyperspy.tests.io.test_blockfile) test_write_data_single() (in module hyperspy.tests.io.test_blockfile) test_write_fresh() (in module hyperspy.tests.io.test_blockfile) test_write_read_unit_imagej() (in module hyperspy.tests.io.test_tiff) test_write_read_unit_imagej_with_description() (in module hyperspy.tests.io.test_tiff) test_write_scale_unit() (in module hyperspy.tests.io.test_tiff) test_write_scale_unit_image_stack() (in module hyperspy.tests.io.test_tiff) test_write_scale_unit_no_export_scale() (in module hyperspy.tests.io.test_tiff) test_write_scale_unit_not_square_pixel() (in module hyperspy.tests.io.test_tiff) test_write_scale_with_um_unit() (in module hyperspy.tests.io.test_tiff) test_write_scale_with_undefined_scale() (in module hyperspy.tests.io.test_tiff) test_write_scale_with_undefined_unit() (in module hyperspy.tests.io.test_tiff) test_wrong_bs() (hyperspy.tests.signal.test_rgb.TestRGBA16 method) (hyperspy.tests.signal.test_rgb.TestRGBA8 method) test_wrong_default_order() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_wrong_item() (hyperspy.tests.utils.test_attrsetter.TestAttrSetter method) test_wrong_kwarg_name() (hyperspy.tests.test_events.TestTriggerArgResolution method) test_wrong_method() (hyperspy.tests.model.test_model.TestModelFitBinned method) test_wrong_out_shape() (hyperspy.tests.signal.test_tools.TestOutArg method) test_wrong_out_shape_masked() (hyperspy.tests.signal.test_tools.TestOutArg method) test_wrong_rgb() (hyperspy.tests.signal.test_rgb.TestRGBA16 method) (hyperspy.tests.signal.test_rgb.TestRGBA8 method) test_xray_lines_near_energy() (in module hyperspy.tests.utils.test_eds) test_xray_range() (hyperspy.tests.signal.test_eds_sem.Test_tools_bulk method) test_zeta_to_edx_cross_section() (hyperspy.tests.signal.test_eds_tem.Test_quantification method) TestAdjustPosition (class in hyperspy.tests.model.test_model) TestAlignTools (class in hyperspy.tests.signal.test_1D_tools) (class in hyperspy.tests.signal.test_2D_tools) TestAlignZLP (class in hyperspy.tests.signal.test_eels) TestAsSignal (class in hyperspy.tests.model.test_model) TestAttrSetter (class in hyperspy.tests.utils.test_attrsetter) TestAxesConfiguration (class in hyperspy.tests.io.test_hdf5) TestAxesManager (class in hyperspy.tests.axes.test_axes_manager) TestBinaryOperators (class in hyperspy.tests.signal.test_signal_operators) TestBSS1D (class in hyperspy.tests.mva.test_bss) TestBSS2D (class in hyperspy.tests.mva.test_bss) TestCallMethods (class in hyperspy.tests.model.test_component) TestCaseSaveAndRead (class in hyperspy.tests.io.test_emd) TestCaseSaveAndReadByte (class in hyperspy.tests.io.test_semper_unf) TestCaseSaveAndReadImage (class in hyperspy.tests.io.test_semper_unf) TestChiSquared (class in hyperspy.tests.model.test_chi_squared) TestComplexProperties (class in hyperspy.tests.signal.test_complex_signal) TestComponentDictionary (class in hyperspy.tests.model.test_model_as_dictionary) TestConvertBaseSignal (class in hyperspy.tests.signal.test_assign_subclass) TestConvertComplexSignal (class in hyperspy.tests.signal.test_assign_subclass) TestConvertComplexSignal1D (class in hyperspy.tests.signal.test_assign_subclass) TestConvertSignal1D (class in hyperspy.tests.signal.test_assign_subclass) TestCreateEELSModel (class in hyperspy.tests.model.test_eelsmodel) TestCreateModel (class in hyperspy.tests.model.test_model) TestDataAxis (class in hyperspy.tests.axes.test_data_axis) TestDerivative (class in hyperspy.tests.signal.test_tools) TestDictionaryBrowser (class in hyperspy.tests.test_dictionary_tree_browser) TestEELSModel (class in hyperspy.tests.model.test_eelsmodel) TestEELSModelSlicing (class in hyperspy.tests.model.test_fancy_indexing) TestEllipsis (class in hyperspy.tests.signal.test_fancy_indexing) TestEstimatePeakWidth (class in hyperspy.tests.signal.test_1D_tools) TestEstimateZLPCentre (class in hyperspy.tests.signal.test_eels) TestEventsSignatures (class in hyperspy.tests.test_events) TestEventsSuppression (class in hyperspy.tests.test_events) TestExample1 (class in hyperspy.tests.io.test_msa) TestExample1_10 (class in hyperspy.tests.io.test_hdf5) TestExample1_11 (class in hyperspy.tests.io.test_hdf5) TestExample2 (class in hyperspy.tests.io.test_msa) TestExpression (class in hyperspy.tests.model.test_components) TestFEIReader (class in hyperspy.tests.io.test_fei) TestFindPeaks1D (class in hyperspy.tests.signal.test_1D_tools) TestFindPeaks1DOhaver (class in hyperspy.tests.signal.test_find_peaks1D_ohaver) TestFitBackground (class in hyperspy.tests.model.test_eelsmodel) TestFitOneComponent (class in hyperspy.tests.model.test_fit_component) TestFitSeveralComponent (class in hyperspy.tests.model.test_fit_component) TestFloatArguments (class in hyperspy.tests.signal.test_fancy_indexing) TestGaussian (class in hyperspy.tests.model.test_components) TestGaussian2D (class in hyperspy.tests.model.test_components2D) TestGeneralMethods (class in hyperspy.tests.model.test_component) (class in hyperspy.tests.model.test_parameter) TestGetExplainedVarinaceRatio (class in hyperspy.tests.mva.test_decomposition) TestGlobalStrategy (class in hyperspy.tests.samfire.test_strategy) TestHeavisideStep (class in hyperspy.tests.model.test_components) TestHistogramSegmenter (class in hyperspy.tests.samfire.test_histogram_segmenter) TestImage (class in hyperspy.tests.signal.test_apply_function) TestImageStretching (class in hyperspy.tests.misc.test_image_tools) TestInformationCriteria (class in hyperspy.tests.samfire.test_goodness_of_fit_tests) TestInteractive (class in hyperspy.tests.test_interactive) (class in hyperspy.tests.utils.test_roi) TestInterpolateInBetween (class in hyperspy.tests.signal.test_1D_tools) TestlineFit (class in hyperspy.tests.model.test_edsmodel) TestLoadingNewSavedMetadata (class in hyperspy.tests.io.test_hdf5) TestLoadingOOMReadOnly (class in hyperspy.tests.io.test_hdf5) TestLocalSimple (class in hyperspy.tests.samfire.test_strategy) TestLocalWithModel (class in hyperspy.tests.samfire.test_strategy) TestMaps (class in hyperspy.tests.model.test_edsmodel) TestModel1D (class in hyperspy.tests.model.test_model) TestModel2D (class in hyperspy.tests.model.test_model) TestModelBinned (class in hyperspy.tests.signal.test_binned) TestModelCallMethod (class in hyperspy.tests.model.test_model) TestModelDictionary (class in hyperspy.tests.model.test_model_as_dictionary) TestModelFitBinned (class in hyperspy.tests.model.test_model) TestModelIndexing (class in hyperspy.tests.model.test_fancy_indexing) TestModelIndexingClass (class in hyperspy.tests.model.test_fancy_indexing) TestModelJacobians (class in hyperspy.tests.model.test_model) TestModelPlotCall (class in hyperspy.tests.model.test_model) TestModelSaving (class in hyperspy.tests.model.test_model_storing) TestModelScalarVariance (class in hyperspy.tests.model.test_model) TestModelSelection (class in hyperspy.tests.model.test_model_selection_criteria) TestModelSettingPZero (class in hyperspy.tests.model.test_model) TestModelSignalVariance (class in hyperspy.tests.model.test_model) TestModelStoring (class in hyperspy.tests.model.test_model_storing) TestModelWeighted (class in hyperspy.tests.model.test_model) TestMultidimensionalActive (class in hyperspy.tests.model.test_component) TestMultifit (class in hyperspy.tests.model.test_model) TestMVAExport (class in hyperspy.tests.mva.test_export) TestNdAxes (class in hyperspy.tests.mva.test_decomposition) TestNormalizeComponents (class in hyperspy.tests.mva.test_decomposition) TestOffset (class in hyperspy.tests.model.test_components) TestORPCA (class in hyperspy.tests.mva.test_rpca) TestOutArg (class in hyperspy.tests.signal.test_tools) TestParameterDictionary (class in hyperspy.tests.model.test_model_as_dictionary) TestParameterLen1 (class in hyperspy.tests.model.test_parameter) TestParameterLen2 (class in hyperspy.tests.model.test_parameter) TestParametersAsSignals (class in hyperspy.tests.component.test_component_active_array) TestParameterTwin (class in hyperspy.tests.model.test_parameter) TestPassingArgs (class in hyperspy.tests.io.test_hdf5) TestPolynomial (class in hyperspy.tests.model.test_components) TestPowerLaw (class in hyperspy.tests.model.test_components) TestPowerLawExtrapolation (class in hyperspy.tests.signal.test_eels) TestRedChisq (class in hyperspy.tests.samfire.test_goodness_of_fit_tests) TestRemoveBackground1DGaussian (class in hyperspy.tests.signal.test_remove_background) TestRemoveBackground1DPowerLaw (class in hyperspy.tests.signal.test_remove_background) TestReturnInfo (class in hyperspy.tests.mva.test_decomposition) TestReverseDecompositionComponent (class in hyperspy.tests.mva.test_decomposition) TestRGBA16 (class in hyperspy.tests.signal.test_rgb) TestRGBA8 (class in hyperspy.tests.signal.test_rgb) TestRGBTools (class in hyperspy.tests.misc.test_rgbtools) TestROIs (class in hyperspy.tests.utils.test_roi) TestRPCA (class in hyperspy.tests.mva.test_rpca) TestSamfireEmpty (class in hyperspy.tests.samfire.test_samfire) TestSamfireMain (class in hyperspy.tests.samfire.test_samfire) TestSamfireUtils (class in hyperspy.tests.samfire.test_utils) TestSamfireWorker (class in hyperspy.tests.samfire.test_samfire) TestSavingMetadataContainers (class in hyperspy.tests.io.test_hdf5) TestScalableFixedPattern (class in hyperspy.tests.model.test_components) TestSetCurrentValuesTo (class in hyperspy.tests.model.test_model) TestSetParameterInModel (class in hyperspy.tests.model.test_set_parameter_state) (class in hyperspy.tests.model.test_set_parameter_value) TestSetParameters (class in hyperspy.tests.component.test_component_set_parameters) TestShift1D (class in hyperspy.tests.signal.test_1D_tools) TestSignal1D (class in hyperspy.tests.signal.test_apply_function) TestSignalAssignSubclass (class in hyperspy.tests.signal.test_assign_subclass) TestSignalFolding (class in hyperspy.tests.signal.test_folding) TestSignalVarianceFolding (class in hyperspy.tests.signal.test_folding) TestSmoothing (class in hyperspy.tests.signal.test_1D_tools) TestStackBuilder (class in hyperspy.tests.io.test_dm_stackbuilder_plugin) TestStoreCurrentValues (class in hyperspy.tests.model.test_model) TestStrategyList (class in hyperspy.tests.samfire.test_strategy_list) TestSubPixelAlign (class in hyperspy.tests.signal.test_2D_tools) TestTriggerArgResolution (class in hyperspy.tests.test_events) TestUnaryOperators (class in hyperspy.tests.signal.test_signal_operators) TestUtilsStack (class in hyperspy.tests.utils.test_stack) TestWeightToFromAtomic (class in hyperspy.tests.utils.test_material) Text (class in hyperspy.drawing._markers.text) thisApplyButton (hyperspy.gui.egerton_quantification.SpikesRemoval attribute) thisFindButton (hyperspy.gui.egerton_quantification.SpikesRemoval attribute) thisOKButton (hyperspy.gui.egerton_quantification.SpikesRemoval attribute) thisPreviousButton (hyperspy.gui.egerton_quantification.SpikesRemoval attribute) tie() (hyperspy.external.mpfit.mpfit.mpfit method) TiffFile (class in hyperspy.external.tifffile) TiffSequence (class in hyperspy.external.tifffile) TiffSequence.ParseError TiffWriter (class in hyperspy.external.tifffile) timeout (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) timestep (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute), [1] title (hyperspy.drawing.figure.BlittedFigure attribute) (hyperspy.drawing.image.ImagePlot attribute) (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) (hyperspy.io_plugins.semper_unf.SemperFormat attribute) to_signal() (hyperspy.io_plugins.semper_unf.SemperFormat method) to_signal1D() (hyperspy._signals.common_signal2d.CommonSignal2D method) to_signal2D() (hyperspy._signals.common_signal1d.CommonSignal1D method) to_spectrum (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) tolerance (hyperspy.samfire_utils.goodness_of_fit_tests.test_general.goodness_test attribute) transmission_function (hyperspy._components.voigt.Voigt attribute) trigger() (hyperspy.events.Event method) trigger_check() (hyperspy.tests.test_events.EventsBase method) trigger_check2() (hyperspy.tests.test_events.EventsBase method) triu_indices_minus_diag() (in module hyperspy._signals.signal2d) turn_diff_line_off() (hyperspy.gui.tools.Smoothing method) turn_diff_line_on() (hyperspy.gui.tools.Smoothing method) turn_logging_off() (in module hyperspy.misc.ipython_tools) turn_logging_on() (in module hyperspy.misc.ipython_tools) turn_off() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) tv_denoise() (in module hyperspy.misc.tv_denoise) twin (hyperspy.component.Parameter attribute), [1] twin_function (hyperspy.component.Parameter attribute) twin_inverse_function (hyperspy.component.Parameter attribute) txt_to_fine_structure_coeff() (hyperspy._components.eels_cl_edge.EELSCLEdge method) type (hyperspy.drawing.signal1d.Signal1DLine attribute), [1] TYPES (hyperspy.external.tifffile.TiffWriter attribute)

U

underline() (in module hyperspy.misc.utils) undo_treatments() (hyperspy.learn.mva.MVA method) unfold() (hyperspy.signal.BaseSignal method) unfold_navigation_space() (hyperspy.signal.BaseSignal method) unfold_signal_space() (hyperspy.signal.BaseSignal method) unfolded (hyperspy.learn.mva.LearningResults attribute) unfolded() (hyperspy.signal.BaseSignal method) unit_vector() (in module hyperspy.drawing._widgets.line2d) units (hyperspy.io_plugins.digital_micrograph.ImageObject attribute) (hyperspy.io_plugins.semper_unf.SemperFormat attribute) unmixing_matrix (hyperspy.learn.mva.LearningResults attribute) unpack_from_intbytes() (in module hyperspy.io_plugins.semper_unf) unpack_new_packed_complex() (hyperspy.io_plugins.digital_micrograph.ImageObject method) unpack_packed_complex() (hyperspy.io_plugins.digital_micrograph.ImageObject method) unwrapped_phase() (hyperspy._signals.complex_signal.ComplexSignal method) update() (hyperspy.drawing._markers.horizontal_line.HorizontalLine method) (hyperspy.drawing._markers.horizontal_line_segment.HorizontalLineSegment method) (hyperspy.drawing._markers.line_segment.LineSegment method) (hyperspy.drawing._markers.point.Point method) (hyperspy.drawing._markers.rectangle.Rectangle method) (hyperspy.drawing._markers.text.Text method) (hyperspy.drawing._markers.vertical_line.VerticalLine method) (hyperspy.drawing._markers.vertical_line_segment.VerticalLineSegment method) (hyperspy.drawing.image.ImagePlot method) (hyperspy.drawing.signal1d.Signal1DFigure method) (hyperspy.drawing.signal1d.Signal1DLine method) (hyperspy.drawing.tiles.HistogramTilePlot method) (hyperspy.interactive.Interactive method) (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.BaseROI method) (hyperspy.samfire.Samfire method), [1] (hyperspy.samfire_utils.segmenters.histogram.HistogramSegmenter method) (hyperspy.samfire_utils.strategy.SamfireStrategy method)

update_axes_attributes_from() (hyperspy.axes.AxesManager method) update_axis() (hyperspy.axes.DataAxis method) update_every (hyperspy.samfire.Samfire attribute) update_from() (hyperspy.axes.DataAxis method) update_histogram() (hyperspy.gui.tools.ImageContrastEditor method) update_index_bounds() (hyperspy.axes.DataAxis method) update_lines() (hyperspy.gui.tools.Smoothing method) update_number_parameters() (hyperspy.component.Component method) update_optional_names() (hyperspy.samfire_utils.samfire_pool.SamfirePool method), [1] update_plot() (hyperspy.gui.egerton_quantification.SpikesRemoval method) (hyperspy.model.BaseModel method), [1] (hyperspy.signal.BaseSignal method) update_position() (hyperspy.gui.tools.LineInSignal1D method) update_range() (hyperspy.drawing._widgets.range.ModifiableSpanSelector method) update_span_selector_traits() (hyperspy.gui.tools.ImageContrastEditor method) (hyperspy.gui.tools.SpanSelectorInSignal1D method) update_spectrum_line() (hyperspy.gui.egerton_quantification.SpikesRemoval method) user (hyperspy.io_plugins.emd.EMD attribute)

V

vacuum_mask() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) validate() (hyperspy.component.NoneFloat method) validate_input() (hyperspy.external.astroML.bayesian_blocks.FitnessFunc method) (hyperspy.external.astroML.bayesian_blocks.RegularEvents method) value (hyperspy.axes.AxesManager attribute) (hyperspy.component.Parameter attribute) value2index() (hyperspy.axes.DataAxis method) value_range_to_indices() (hyperspy.axes.DataAxis method) valuemax() (hyperspy.signal.BaseSignal method) values() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) var() (hyperspy.signal.BaseSignal method) VerticalLine (class in hyperspy.drawing._markers.vertical_line)

VerticalLineSegment (class in hyperspy.drawing._markers.vertical_line_segment) VerticalLineWidget (class in hyperspy.drawing._widgets.vertical_line) Vignetting (class in hyperspy._components.eels_vignetting) VisibleDeprecationWarning vmax (hyperspy.drawing.image.ImagePlot attribute) vmin (hyperspy.drawing.image.ImagePlot attribute) Voigt (class in hyperspy._components.voigt) voigt() (in module hyperspy._components.voigt) VolumePlasmonDrude (class in hyperspy._components.volume_plasmon_drude)

W

warning() (in module hyperspy.messages) warning_exit() (in module hyperspy.messages) warnsA() (in module hyperspy.tests.misc.test_test_utils) warnsB() (in module hyperspy.tests.misc.test_test_utils) warnsC() (in module hyperspy.tests.misc.test_test_utils) weight (hyperspy.samfire_utils.strategy.LocalStrategy attribute) weight_to_atomic() (in module hyperspy.misc.material) Widget1DBase (class in hyperspy.drawing.widget) Widget2DBase (class in hyperspy.drawing.widget) WidgetBase (class in hyperspy.drawing.widget)

width (hyperspy.drawing._widgets.rectangles.RectangleWidget attribute) (hyperspy.roi.RectangularROI attribute) without_nans() (in module hyperspy.misc.utils) Worker (class in hyperspy.samfire_utils.samfire_worker) workers (hyperspy.samfire.Samfire attribute) write() (hyperspy.external.tifffile.FileHandle method) write_array() (hyperspy.external.tifffile.FileHandle method) write_raw() (in module hyperspy.io_plugins.ripple) write_rpl() (in module hyperspy.io_plugins.ripple) write_signal() (in module hyperspy.io_plugins.hdf5) WrongObjectError

X

x (hyperspy.roi.RectangularROI attribute) xray_lines_model() (in module hyperspy.misc.eds.utils)

xray_range() (in module hyperspy.misc.eds.utils)

Y

y (hyperspy.roi.RectangularROI attribute)

Z

zeta_to_edx_cross_section() (in module hyperspy.misc.eds.utils)