Index

A

active_components (hyperspy.model.BaseModel property) active_is_multidimensional (hyperspy.component.Component property) add() (hyperspy.events.EventSuppressor method) add_dictionary() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_gaussian_noise() (hyperspy.api.signals.BaseSignal method) add_items() (hyperspy.api.plot.markers.Markers method) add_jobs() (hyperspy.api.samfire.SamfirePool method) add_marker() (hyperspy.api.signals.BaseSignal method) add_node() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_phase_ramp() (hyperspy.api.signals.ComplexSignal2D method) add_poissonian_noise() (hyperspy.api.signals.BaseSignal method) add_ramp() (hyperspy.api.signals.Signal2D method) add_signal_range() (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) add_widget() (hyperspy.roi.BaseInteractiveROI method) AIC_test (class in hyperspy.api.samfire.fit_tests) AICc_test (class in hyperspy.api.samfire.fit_tests) align1D() (hyperspy.api.signals.Signal1D method) align2D() (hyperspy.api.signals.Signal2D method) amplitude (hyperspy.api.signals.ComplexSignal property) angle() (hyperspy.api.roi.Line2DROI method) (hyperspy.api.signals.ComplexSignal method)

append() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.samfire.Samfire method) apply_apodization() (hyperspy.api.signals.BaseSignal method) Arctan (class in hyperspy.api.model.components1D) argand_diagram() (hyperspy.api.signals.ComplexSignal method) Arrows (class in hyperspy.api.plot.markers) as_dictionary() (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.misc.utils.DictionaryTreeBrowser method) (hyperspy.model.BaseModel method) as_lazy() (hyperspy.api.signals.BaseSignal method) as_signal() (hyperspy.component.Parameter method) (hyperspy.model.BaseModel method) as_signal1D() (hyperspy.api.signals.BaseSignal method) as_signal2D() (hyperspy.api.signals.BaseSignal method) assign_current_value_to_all() (hyperspy.component.Parameter method) assign_current_values_to_all() (hyperspy.model.BaseModel method) atomic_resolution_image() (in module hyperspy.api.data) axes_are_aligned_with_data (hyperspy.axes.AxesManager property) AxesManager (class in hyperspy.axes)

B

backup() (hyperspy.samfire.Samfire method) BaseDataAxis (class in hyperspy.axes) BaseInteractiveROI (class in hyperspy.roi) BaseModel (class in hyperspy.model)

BaseROI (class in hyperspy.roi) BaseSignal (class in hyperspy.api.signals) BIC_test (class in hyperspy.api.samfire.fit_tests) Bleasdale (class in hyperspy.api.model.components1D) blind_source_separation() (hyperspy.api.signals.BaseSignal method)

C

calibrate() (hyperspy.api.signals.Signal1D method) (hyperspy.api.signals.Signal2D method) change_dtype() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) (hyperspy.api.signals.ComplexSignal method) change_strategy() (hyperspy.samfire.Samfire method) chisq (hyperspy.model.BaseModel property) CircleROI (class in hyperspy.api.roi) Circles (class in hyperspy.api.plot.markers) clean() (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) clean_peaks() (in module hyperspy.utils.peakfinders2D) close() (hyperspy.api.plot.markers.Markers method) close_file() (hyperspy._signals.lazy.LazySignal method) cluster_analysis() (hyperspy.api.signals.BaseSignal method) collect_results() (hyperspy.api.samfire.SamfirePool method) combine_rois() (in module hyperspy.api.roi) CommonSignal1D (class in hyperspy._signals.common_signal1d) CommonSignal2D (class in hyperspy._signals.common_signal2d) compile_function() (hyperspy.api.model.components1D.Expression method) ComplexSignal (class in hyperspy.api.signals) ComplexSignal1D (class in hyperspy.api.signals)

ComplexSignal2D (class in hyperspy.api.signals) Component (class in hyperspy.component) components (hyperspy.model.BaseModel property) compute() (hyperspy._signals.lazy.LazySignal method) compute_navigator() (hyperspy._signals.lazy.LazySignal method) connect() (hyperspy.events.Event method) connected (hyperspy.events.Event property) convert_to_non_uniform_axis() (hyperspy.axes.FunctionalDataAxis method) convert_to_uniform_axis() (hyperspy.axes.BaseDataAxis method) convert_to_units() (hyperspy.axes.UnitConversion method) convert_units() (hyperspy.axes.AxesManager method) coordinates (hyperspy.axes.AxesManager property) copy() (hyperspy.api.signals.BaseSignal method) (hyperspy.misc.utils.DictionaryTreeBrowser method) create_axes() (hyperspy.axes.AxesManager method) create_model() (hyperspy.api.signals.Signal1D method) (hyperspy.api.signals.Signal2D method) create_samfire() (hyperspy.model.BaseModel method) crop() (hyperspy.api.signals.BaseSignal method) (hyperspy.axes.DataAxis method) (hyperspy.axes.FunctionalDataAxis method) (hyperspy.axes.UniformDataAxis method) crop_decomposition_dimension() (hyperspy.learn.mva.LearningResults method) crop_signal() (hyperspy.api.signals.Signal1D method) (hyperspy.api.signals.Signal2D method)

D

data (hyperspy.api.signals.BaseSignal property) DataAxis (class in hyperspy.axes) decomposition() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) deepcopy() (hyperspy.api.signals.BaseSignal method) (hyperspy.misc.utils.DictionaryTreeBrowser method) default_traits_view() (hyperspy.component.Parameter method) derivative() (hyperspy.api.signals.BaseSignal method)

DictionaryTreeBrowser (class in hyperspy.misc.utils) diff() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) disable_adjust_position() (hyperspy.models.model1d.Model1D method) disable_plot_components() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) disconnect() (hyperspy.events.Event method) dof (hyperspy.model.BaseModel property) Doniach (class in hyperspy.api.model.components1D)

E

Ellipses (class in hyperspy.api.plot.markers) enable_adjust_position() (hyperspy.models.model1d.Model1D method) enable_plot_components() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) ensure_parameters_in_bounds() (hyperspy.model.BaseModel method) Erf (class in hyperspy.api.model.components1D) estimate_elbow_position() (hyperspy.api.signals.BaseSignal method) estimate_number_of_clusters() (hyperspy.api.signals.BaseSignal method) estimate_parameters() (hyperspy.api.model.components1D.Doniach method) (hyperspy.api.model.components1D.Exponential method) (hyperspy.api.model.components1D.Gaussian method) (hyperspy.api.model.components1D.GaussianHF method) (hyperspy.api.model.components1D.Lorentzian method) (hyperspy.api.model.components1D.Offset method) (hyperspy.api.model.components1D.Polynomial method) (hyperspy.api.model.components1D.PowerLaw method) (hyperspy.api.model.components1D.SkewNormal method) (hyperspy.api.model.components1D.SplitVoigt method) (hyperspy.api.model.components1D.Voigt method) estimate_peak_width() (hyperspy.api.signals.Signal1D method)

estimate_poissonian_noise_variance() (hyperspy.api.signals.BaseSignal method) estimate_shift1D() (hyperspy.api.signals.Signal1D method) estimate_shift2D() (hyperspy.api.signals.Signal2D method) Event (class in hyperspy.events) Events (class in hyperspy.events) EventSuppressor (class in hyperspy.events) Exponential (class in hyperspy.api.model.components1D) export() (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.misc.utils.DictionaryTreeBrowser method) export_bss_results() (hyperspy.api.signals.BaseSignal method) export_cluster_results() (hyperspy.api.signals.BaseSignal method) export_decomposition_results() (hyperspy.api.signals.BaseSignal method) export_results() (hyperspy.model.BaseModel method) export_to_dictionary() (in module hyperspy.misc.export_dictionary) Expression (class in hyperspy.api.model.components1D) ext_bounded (hyperspy.component.Parameter property) ext_force_positive (hyperspy.component.Parameter property) extend() (hyperspy.model.BaseModel method) (hyperspy.samfire.Samfire method)

F

fetch() (hyperspy.component.Parameter method) fetch_stored_values() (hyperspy.model.BaseModel method) fetch_values_from_array() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) fft() (hyperspy.api.signals.BaseSignal method) filter_butterworth() (hyperspy.api.signals.Signal1D method) find_local_max() (in module hyperspy.utils.peakfinders2D) find_peaks() (hyperspy.api.signals.Signal2D method) find_peaks1D_ohaver() (hyperspy.api.signals.Signal1D method) find_peaks_dog() (in module hyperspy.utils.peakfinders2D) find_peaks_log() (in module hyperspy.utils.peakfinders2D) find_peaks_max() (in module hyperspy.utils.peakfinders2D) find_peaks_minmax() (in module hyperspy.utils.peakfinders2D) find_peaks_stat() (in module hyperspy.utils.peakfinders2D) find_peaks_xc() (in module hyperspy.utils.peakfinders2D) find_peaks_zaefferer() (in module hyperspy.utils.peakfinders2D)

finish() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method) fit() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method) (hyperspy.model.BaseModel method) fit_component() (hyperspy.models.model1d.Model1D method) fold() (hyperspy.api.signals.BaseSignal method) free (hyperspy.component.Parameter attribute) free_parameters (hyperspy.component.Component property) from_signal() (hyperspy.api.plot.markers.Markers class method) function() (hyperspy.api.model.components1D.SplitVoigt method) function_nd() (hyperspy.api.model.components1D.Expression method) (hyperspy.api.model.components1D.Offset method) (hyperspy.api.model.components1D.ScalableFixedPattern method) (hyperspy.api.model.components1D.SplitVoigt method) FunctionalDataAxis (class in hyperspy.axes)

G

Gaussian (class in hyperspy.api.model.components1D) Gaussian2D (class in hyperspy.api.model.components2D) gaussian_filter() (hyperspy.api.signals.Signal1D method) GaussianHF (class in hyperspy.api.model.components1D) generate_values() (hyperspy.samfire.Samfire method) get() (hyperspy.misc.utils.TupleSA method) get_bss_factors() (hyperspy.api.signals.BaseSignal method) get_bss_loadings() (hyperspy.api.signals.BaseSignal method) get_bss_model() (hyperspy.api.signals.BaseSignal method) get_chunk_size() (hyperspy._signals.lazy.LazySignal method) get_cluster_distances() (hyperspy.api.signals.BaseSignal method) get_cluster_labels() (hyperspy.api.signals.BaseSignal method) get_cluster_signals() (hyperspy.api.signals.BaseSignal method) get_configuration_directory_path() (in module hyperspy.api) get_current_kwargs() (hyperspy.api.plot.markers.HorizontalLines method) (hyperspy.api.plot.markers.Markers method) (hyperspy.api.plot.markers.VerticalLines method) get_current_signal() (hyperspy.api.signals.BaseSignal method) get_decomposition_factors() (hyperspy.api.signals.BaseSignal method) get_decomposition_loadings() (hyperspy.api.signals.BaseSignal method) get_decomposition_model() (hyperspy.api.signals.BaseSignal method) get_dimensions_from_data() (hyperspy.api.signals.BaseSignal method)

get_explained_variance_ratio() (hyperspy.api.signals.BaseSignal method) get_histogram() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) get_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) get_noise_variance() (hyperspy.api.signals.BaseSignal method) GlobalStrategy (class in hyperspy.api.samfire.global_strategies) grad_a() (hyperspy.api.model.components1D.Bleasdale method) grad_b() (hyperspy.api.model.components1D.Bleasdale method) grad_c() (hyperspy.api.model.components1D.Bleasdale method) gui() (hyperspy.api.model.components1D.ScalableFixedPattern method) (hyperspy.api.roi.CircleROI method) (hyperspy.api.roi.Line2DROI method) (hyperspy.api.roi.Point1DROI method) (hyperspy.api.roi.Point2DROI method) (hyperspy.api.roi.RectangularROI method) (hyperspy.api.roi.SpanROI method) (hyperspy.axes.AxesManager method) (hyperspy.axes.BaseDataAxis method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.model.BaseModel method) gui_navigation_sliders() (hyperspy.axes.AxesManager method)

H

hanning_taper() (hyperspy.api.signals.Signal1D method) has_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) has_pool (hyperspy.utils.parallel_pool.ParallelPool property) HeavisideStep (class in hyperspy.api.model.components1D) height (hyperspy.api.roi.RectangularROI property) HistogramStrategy (class in hyperspy.api.samfire.global_strategies) HorizontalLines (class in hyperspy.api.plot.markers) hyperspy.api module hyperspy.api.data module hyperspy.api.model module hyperspy.api.model.components1D module hyperspy.api.model.components2D module hyperspy.api.plot module hyperspy.api.plot.markers module hyperspy.api.roi module hyperspy.api.samfire module hyperspy.api.samfire.fit_tests module hyperspy.api.samfire.global_strategies module

hyperspy.api.samfire.local_strategies module hyperspy.api.signals module hyperspy.axes module hyperspy.events module hyperspy.learn.mlpca module hyperspy.learn.mva module hyperspy.learn.ornmf module hyperspy.learn.orthomax module hyperspy.learn.rpca module hyperspy.learn.svd_pca module hyperspy.learn.whitening module hyperspy.models.model1d module hyperspy.models.model2d module hyperspy.roi module hyperspy.utils.peakfinders2D module

I

ifft() (hyperspy.api.signals.BaseSignal method) imag (hyperspy.api.signals.ComplexSignal property) inav (hyperspy.api.signals.BaseSignal attribute) indexmax() (hyperspy.api.signals.BaseSignal method) indexmin() (hyperspy.api.signals.BaseSignal method) indices (hyperspy.axes.AxesManager property) init_parameters() (hyperspy.component.Component method) insert() (hyperspy.model.BaseModel method) integral_as_signal() (hyperspy.api.model.components1D.GaussianHF method) integrate1D() (hyperspy.api.signals.BaseSignal method) integrate_simpson() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) interactive() (hyperspy.roi.BaseInteractiveROI method) (in module hyperspy.api)

interpolate_in_between() (hyperspy.api.signals.Signal1D method) interpolate_on_axis() (hyperspy.api.signals.BaseSignal method) is_ipyparallel (hyperspy.utils.parallel_pool.ParallelPool property) is_multiprocessing (hyperspy.utils.parallel_pool.ParallelPool property) is_rgb (hyperspy.api.signals.BaseSignal property) is_rgba (hyperspy.api.signals.BaseSignal property) is_rgbx (hyperspy.api.signals.BaseSignal property) is_valid() (hyperspy.api.roi.CircleROI method) (hyperspy.api.roi.PolygonROI method) (hyperspy.api.roi.RectangularROI method) (hyperspy.api.roi.SpanROI method) (hyperspy.roi.BaseROI method) isig (hyperspy.api.signals.BaseSignal attribute) iterpath (hyperspy.axes.AxesManager property)

K

key_navigator() (hyperspy.axes.AxesManager method)

keys() (hyperspy.misc.utils.DictionaryTreeBrowser method)

L

LazyComplexSignal (class in hyperspy._lazy_signals) LazyComplexSignal1D (class in hyperspy._lazy_signals) LazyComplexSignal2D (class in hyperspy._lazy_signals) LazySignal (class in hyperspy._signals.lazy) LazySignal1D (class in hyperspy._lazy_signals) LazySignal2D (class in hyperspy._lazy_signals) LearningResults (class in hyperspy.learn.mva) Line2DROI (class in hyperspy.api.roi)

Lines (class in hyperspy.api.plot.markers) load() (hyperspy.learn.mva.LearningResults method) (in module hyperspy.api) load_parameters_from_file() (hyperspy.model.BaseModel method) LocalStrategy (class in hyperspy.api.samfire.local_strategies) log() (hyperspy.samfire.Samfire method) Logistic (class in hyperspy.api.model.components1D) Lorentzian (class in hyperspy.api.model.components1D) luminescence_signal() (in module hyperspy.api.data)

M

map (hyperspy.component.Parameter attribute) map() (hyperspy.api.samfire.fit_tests.AIC_test method) (hyperspy.api.samfire.fit_tests.AICc_test method) (hyperspy.api.samfire.fit_tests.BIC_test method) (hyperspy.api.samfire.fit_tests.red_chisq_test method) (hyperspy.api.signals.BaseSignal method) Markers (class in hyperspy.api.plot.markers) mask_from_rois() (in module hyperspy.api.roi) max() (hyperspy.api.signals.BaseSignal method) mean (hyperspy.api.model.components1D.SkewNormal property) mean() (hyperspy.api.signals.BaseSignal method) metadata (hyperspy.api.signals.BaseSignal property) min() (hyperspy.api.signals.BaseSignal method) mlpca() (in module hyperspy.learn.mlpca) mode (hyperspy.api.model.components1D.SkewNormal property) Model1D (class in hyperspy.models.model1d) Model2D (class in hyperspy.models.model2d) ModelComponents (class in hyperspy.model) ModelManager (class in hyperspy.signal) module hyperspy.api hyperspy.api.data hyperspy.api.model hyperspy.api.model.components1D hyperspy.api.model.components2D hyperspy.api.plot hyperspy.api.plot.markers hyperspy.api.roi hyperspy.api.samfire hyperspy.api.samfire.fit_tests hyperspy.api.samfire.global_strategies hyperspy.api.samfire.local_strategies hyperspy.api.signals hyperspy.axes hyperspy.events hyperspy.learn.mlpca hyperspy.learn.mva hyperspy.learn.ornmf hyperspy.learn.orthomax hyperspy.learn.rpca hyperspy.learn.svd_pca hyperspy.learn.whitening hyperspy.models.model1d hyperspy.models.model2d hyperspy.roi hyperspy.utils.peakfinders2D

multifit() (hyperspy.model.BaseModel method)

N

nanmax() (hyperspy.api.signals.BaseSignal method) nanmean() (hyperspy.api.signals.BaseSignal method) nanmin() (hyperspy.api.signals.BaseSignal method) nanstd() (hyperspy.api.signals.BaseSignal method) nansum() (hyperspy.api.signals.BaseSignal method) nanvar() (hyperspy.api.signals.BaseSignal method) navigation_axes (hyperspy.axes.AxesManager property)

navigation_dimension (hyperspy.axes.AxesManager property) navigation_extent (hyperspy.axes.AxesManager property) navigation_shape (hyperspy.axes.AxesManager property) navigation_size (hyperspy.axes.AxesManager property) need_pixels (hyperspy.api.samfire.SamfirePool property) normalize_bss_components() (hyperspy.api.signals.BaseSignal method) normalize_decomposition_components() (hyperspy.api.signals.BaseSignal method) normalize_poissonian_noise() (hyperspy.api.signals.BaseSignal method)

O

Offset (class in hyperspy.api.model.components1D) offset_transform (hyperspy.api.plot.markers.Markers property) original_metadata (hyperspy.api.signals.BaseSignal property) ORNMF (class in hyperspy.learn.ornmf)

ornmf() (in module hyperspy.learn.ornmf) ORPCA (class in hyperspy.learn.rpca) orpca() (in module hyperspy.learn.rpca) orthomax() (in module hyperspy.learn.orthomax)

P

ParallelPool (class in hyperspy.utils.parallel_pool) Parameter (class in hyperspy.component) parameters (hyperspy.component.Component property) parse() (hyperspy.api.samfire.SamfirePool method) phase (hyperspy.api.signals.ComplexSignal property) ping_workers() (hyperspy.api.samfire.SamfirePool method) pixels_done (hyperspy.samfire.Samfire property) pixels_left (hyperspy.samfire.Samfire property) plot() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.plot.markers.Markers method) (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) (hyperspy.api.signals.BaseSignal method) (hyperspy.api.signals.ComplexSignal method) (hyperspy.api.signals.ComplexSignal2D method) (hyperspy.api.signals.Signal1D method) (hyperspy.api.signals.Signal2D method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.models.model1d.Model1D method) (hyperspy.samfire.Samfire method) plot_bss_factors() (hyperspy.api.signals.BaseSignal method) plot_bss_loadings() (hyperspy.api.signals.BaseSignal method) plot_bss_results() (hyperspy.api.signals.BaseSignal method) plot_cluster_distances() (hyperspy.api.signals.BaseSignal method) plot_cluster_labels() (hyperspy.api.signals.BaseSignal method) plot_cluster_metric() (hyperspy.api.signals.BaseSignal method) plot_cluster_results() (hyperspy.api.signals.BaseSignal method)

plot_cluster_signals() (hyperspy.api.signals.BaseSignal method) plot_colorbar() (hyperspy.api.plot.markers.Markers method) plot_cumulative_explained_variance_ratio() (hyperspy.api.signals.BaseSignal method) plot_decomposition_factors() (hyperspy.api.signals.BaseSignal method) plot_decomposition_loadings() (hyperspy.api.signals.BaseSignal method) plot_decomposition_results() (hyperspy.api.signals.BaseSignal method) plot_explained_variance_ratio() (hyperspy.api.signals.BaseSignal method) plot_histograms() (in module hyperspy.api.plot) plot_images() (in module hyperspy.api.plot) plot_results() (hyperspy.model.BaseModel method) plot_roi_map() (in module hyperspy.api.plot) plot_signals() (in module hyperspy.api.plot) plot_spectra() (in module hyperspy.api.plot) Point1DROI (class in hyperspy.api.roi) Point2DROI (class in hyperspy.api.roi) Points (class in hyperspy.api.plot.markers) PolygonROI (class in hyperspy.api.roi) Polygons (class in hyperspy.api.plot.markers) Polynomial (class in hyperspy.api.model.components1D) pop() (hyperspy.signal.ModelManager method) PowerLaw (class in hyperspy.api.model.components1D) prepare_interpolator() (hyperspy.api.model.components1D.ScalableFixedPattern method) prepare_workers() (hyperspy.api.samfire.SamfirePool method) print_current_values() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) print_known_signal_types() (in module hyperspy.api) print_summary_statistics() (hyperspy.api.signals.BaseSignal method) process_lazy_attributes() (hyperspy.misc.utils.DictionaryTreeBrowser method) profile_line() (hyperspy.api.roi.Line2DROI static method) project() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method)

R

radii (hyperspy.api.samfire.local_strategies.LocalStrategy property) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy property) ragged (hyperspy.api.signals.BaseSignal property) RC (class in hyperspy.api.model.components1D) real (hyperspy.api.signals.ComplexSignal property) rebin() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) rechunk() (hyperspy._signals.lazy.LazySignal method) Rectangles (class in hyperspy.api.plot.markers) RectangularROI (class in hyperspy.api.roi) red_chisq (hyperspy.model.BaseModel property) red_chisq_test (class in hyperspy.api.samfire.fit_tests) ReducedChiSquaredStrategy (class in hyperspy.api.samfire.local_strategies) refresh() (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) refresh_database() (hyperspy.samfire.Samfire method) remove() (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) (hyperspy.axes.AxesManager method) (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.samfire.Samfire method) (hyperspy.signal.ModelManager method)

remove_background() (hyperspy.api.signals.Signal1D method) remove_items() (hyperspy.api.plot.markers.Markers method) remove_signal_range() (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) remove_widget() (hyperspy.roi.BaseInteractiveROI method) reset_signal_range() (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) restore() (hyperspy.signal.ModelManager method) reverse_bss_component() (hyperspy.api.signals.BaseSignal method) reverse_decomposition_component() (hyperspy.api.signals.BaseSignal method) rollaxis() (hyperspy.api.signals.BaseSignal method) rpca_godec() (in module hyperspy.learn.rpca) run() (hyperspy.api.samfire.SamfirePool method)

S

samf (hyperspy.api.samfire.local_strategies.LocalStrategy property) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy property) Samfire (class in hyperspy.samfire) SamfirePool (class in hyperspy.api.samfire) save() (hyperspy.api.signals.BaseSignal method) (hyperspy.learn.mva.LearningResults method) (hyperspy.model.BaseModel method) save_parameters2file() (hyperspy.model.BaseModel method) ScalableFixedPattern (class in hyperspy.api.model.components1D) set() (hyperspy.misc.utils.TupleSA method) set_axis() (hyperspy.axes.AxesManager method) set_component_active_value() (hyperspy.model.BaseModel method) set_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) set_log_level() (in module hyperspy.api) set_noise_variance() (hyperspy.api.signals.BaseSignal method) set_parameters_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_not_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_value() (hyperspy.model.BaseModel method) set_ScalarMappable_array() (hyperspy.api.plot.markers.Markers method) set_signal_origin() (hyperspy.api.signals.BaseSignal method) set_signal_range() (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) set_signal_range_from_mask() (hyperspy.model.BaseModel method) set_signal_type() (hyperspy.api.signals.BaseSignal method) setup() (hyperspy.utils.parallel_pool.ParallelPool method) shift1D() (hyperspy.api.signals.Signal1D method) signal (hyperspy.model.BaseModel property) Signal1D (class in hyperspy.api.signals) Signal2D (class in hyperspy.api.signals) signal_axes (hyperspy.axes.AxesManager property) signal_dimension (hyperspy.axes.AxesManager property) signal_extent (hyperspy.axes.AxesManager property) signal_shape (hyperspy.axes.AxesManager property)

signal_size (hyperspy.axes.AxesManager property) skewness (hyperspy.api.model.components1D.SkewNormal property) SkewNormal (class in hyperspy.api.model.components1D) sleep() (hyperspy.utils.parallel_pool.ParallelPool method) smooth_lowess() (hyperspy.api.signals.Signal1D method) smooth_savitzky_golay() (hyperspy.api.signals.Signal1D method) smooth_tv() (hyperspy.api.signals.Signal1D method) SpanROI (class in hyperspy.api.roi) spikes_diagnosis() (hyperspy.api.signals.Signal1D method) spikes_removal_tool() (hyperspy.api.signals.Signal1D method) split() (hyperspy.api.signals.BaseSignal method) SplitVoigt (class in hyperspy.api.model.components1D) Squares (class in hyperspy.api.plot.markers) squeeze() (hyperspy.api.signals.BaseSignal method) stack() (in module hyperspy.api) start() (hyperspy.samfire.Samfire method) std() (hyperspy.api.signals.BaseSignal method) stop() (hyperspy.api.samfire.SamfirePool method) (hyperspy.samfire.Samfire method) store() (hyperspy.model.BaseModel method) (hyperspy.signal.ModelManager method) store_current_value_in_array() (hyperspy.component.Parameter method) store_current_values() (hyperspy.model.BaseModel method) sum() (hyperspy.api.signals.BaseSignal method) summary() (hyperspy.learn.mva.LearningResults method) suppress() (hyperspy.events.Event method) (hyperspy.events.Events method) (hyperspy.events.EventSuppressor method) suppress_callback() (hyperspy.events.Event method) suspend_update() (hyperspy.model.BaseModel method) svd_flip_signs() (in module hyperspy.learn.svd_pca) svd_pca() (in module hyperspy.learn.svd_pca) svd_solve() (in module hyperspy.learn.svd_pca) swap_axes() (hyperspy.api.signals.BaseSignal method) switch_iterpath() (hyperspy.axes.AxesManager method)

T

T (hyperspy.api.signals.BaseSignal property) test() (hyperspy.api.samfire.fit_tests.AIC_test method) (hyperspy.api.samfire.fit_tests.AICc_test method) (hyperspy.api.samfire.fit_tests.BIC_test method) (hyperspy.api.samfire.fit_tests.red_chisq_test method) Texts (class in hyperspy.api.plot.markers) to_device() (hyperspy.api.signals.BaseSignal method) to_host() (hyperspy.api.signals.BaseSignal method) to_signal1D() (hyperspy._signals.common_signal2d.CommonSignal2D method) to_signal2D() (hyperspy._signals.common_signal1d.CommonSignal1D method)

tolerance (hyperspy.api.samfire.fit_tests.red_chisq_test property) transform (hyperspy.api.plot.markers.Markers property) transpose() (hyperspy.api.signals.BaseSignal method) (in module hyperspy.api) trigger() (hyperspy.events.Event method) TupleSA (class in hyperspy.misc.utils) twin (hyperspy.component.Parameter property) twin_function_expr (hyperspy.component.Parameter property) twin_inverse_function_expr (hyperspy.component.Parameter property) two_gaussians() (in module hyperspy.api.data)

U

undo_treatments() (hyperspy.api.signals.BaseSignal method) unfold() (hyperspy.api.signals.BaseSignal method) unfold_navigation_space() (hyperspy.api.signals.BaseSignal method) unfold_signal_space() (hyperspy.api.signals.BaseSignal method) unfolded() (hyperspy.api.signals.BaseSignal method) UniformDataAxis (class in hyperspy.axes) UnitConversion (class in hyperspy.axes) unwrapped_phase() (hyperspy.api.signals.ComplexSignal method) update() (hyperspy.api.plot.markers.Arrows method) (hyperspy.api.plot.markers.Markers method) (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.BaseROI method) (hyperspy.samfire.Samfire method)

update_axes_attributes_from() (hyperspy.axes.AxesManager method) update_axis() (hyperspy.axes.DataAxis method) update_from() (hyperspy.axes.BaseDataAxis method) (hyperspy.axes.DataAxis method) (hyperspy.axes.FunctionalDataAxis method) (hyperspy.axes.UniformDataAxis method) update_parameters() (hyperspy.api.samfire.SamfirePool method) update_plot() (hyperspy.api.signals.BaseSignal method) (hyperspy.model.BaseModel method)

V

value (hyperspy.component.Parameter attribute) value2index() (hyperspy.axes.BaseDataAxis method) (hyperspy.axes.UniformDataAxis method) value_range_to_indices() (hyperspy.axes.BaseDataAxis method) valuemax() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method) valuemin() (hyperspy._signals.lazy.LazySignal method) (hyperspy.api.signals.BaseSignal method)

values() (hyperspy.api.samfire.global_strategies.GlobalStrategy method) (hyperspy.api.samfire.global_strategies.HistogramStrategy method) (hyperspy.api.samfire.local_strategies.LocalStrategy method) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy method) var() (hyperspy.api.signals.BaseSignal method) variance (hyperspy.api.model.components1D.SkewNormal property) VerticalLines (class in hyperspy.api.plot.markers) vertices (hyperspy.api.roi.PolygonROI property) Voigt (class in hyperspy.api.model.components1D)

W

wave_image() (in module hyperspy.api.data) weight (hyperspy.api.samfire.local_strategies.LocalStrategy property) (hyperspy.api.samfire.local_strategies.ReducedChiSquaredStrategy property)

whiten_data() (in module hyperspy.learn.whitening) width (hyperspy.api.roi.RectangularROI property)

X

x (hyperspy.api.roi.RectangularROI property)

Y

y (hyperspy.api.roi.RectangularROI property)