Data view

The data tree widget is a core component of the UI, as it lists all the currently loaded signals and models. It can also be used to achieve some common tasks such as replotting the signal/model, closing a signal, deleting a model, and hiding/showing all the plots of a signal. While useful for normal signals, it is almost a necessity for managing models and their components. Each model and component are listed hierarchically in the tree view, and clicking the components shows an editor for manipulating the parameters of the component. Right clicking on the different models and components also allows acces to some actions that are unavailable elsewhere.

For all models:

Plot the model, or replot it if already plotted.
Fit the currently active spectrum
Fit all the spectra in the current signal
Set signal range
Constrict the signal range used for the fitting routines
Delete the model
Add component
Adds a component of the given type to the model

Additional actions for hyperspy.models.EELSModel:

Set low-loss
Specify the corresponding low-loss signal for a core-loss signal.
Enable fine structure
See hyperspy.models.EELSModel.enable_fine_structure() for details on what this does.

Element picker

The element picker is a miniature periodic table. If an EDSSpectrum or EELSSpectrum is selected it can be used to add elements to the signal. For EDS spectra, right clicking on the elements will allow the selection of specific xray lines to add. The different EDX lines can be indicated on the plot by checking the ‘Markers’ checkbox, and integrated intensity maps of the α-lines can be created by clicking the ‘Maps’ button (see get_lines_intensity for details).


Contrast control

A ContrastWidget type widget for adjusting the contrast response of image plots. The ‘Level’ slider specifies the lower cut-off intensity, and the ‘Window’ slider controls the width of the intensity window starting at level. The ‘Auto’ option uses the automatic settings of hyperspy.drawing.image.ImagePlot.

By selecting ‘Log’ a logarithmic transform is applied to the image cotrast. This only affects the plot, and leaves the data untouched.


Colormap picker

A CMapPickerWidget type widget for changing the colormap of image plots. The dropdown shows all the colormaps available in matplotlib, grouped by category. It also shows a preview of the colorscale alongside the name.


Axes configuration

Axes order

Recorder widget

The record widget offers controls to turn on or off recording to a dedicated Code editor widget. Two checkboxes allow for selecting what should be recorded. See Recording code for details on what is recorded, and how it can be used.


Console widget

The console widget is a qtconsole console widget running IPython, and can run any code that IPython can. For details on how to successfully use it, see the Internal Console section.