Index

_

__get_ipr_header() (in module hyperspy.io_plugins.edax) __get_spc_header() (in module hyperspy.io_plugins.edax) _add_background_windows_markers() (hyperspy._signals.eds.EDSSpectrum method) _add_edges_from_subshells_names() (hyperspy.models.eelsmodel.EELSModel method) _add_patch_to() (hyperspy.drawing._widgets.horizontal_line.HorizontalLineWidget method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.vertical_line.VerticalLineWidget method) (hyperspy.drawing.widget.ResizersMixin method) (hyperspy.drawing.widget.WidgetBase method) _add_signal_range_in_pixels() (hyperspy.models.model1d.Model1D method) _add_spc_metadata() (in module hyperspy.io_plugins.edax) _add_vertical_lines_groups() (hyperspy._signals.eds.EDSSpectrum method) _append_work_dict_to_content() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _apply_changes() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) _apply_roi2widget() (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) _are_microscope_parameters_missing() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) _assemble_dim_list() (in module hyperspy.io_plugins.usid_hdf5) _atomic_to_weight() (in module hyperspy.misc.material) _auto_update_line() (hyperspy.drawing.signal1d.Signal1DLine method) _axes_defaults() (in module hyperspy.io_plugins.tiff) _block_iterator() (hyperspy._signals.lazy.LazySignal method) _bounds_as_tuple() (hyperspy.model.BaseModel method) _build_1D_series() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_axes_dictionaries() (in module hyperspy.io_plugins.tiff) _build_general_1D_data() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_hyperspectral_map() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_metadata() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_original_metadata() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_RGB_image() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_RGB_surface() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_spectrum() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_sur_dict() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_surface() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_surface_series() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_Tax() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_Xax() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _build_Yax() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _byte_to_string() (in module hyperspy.io_plugins.nexus) _calculate_covariance() (in module hyperspy.misc.model_tools) _calculate_recmatrix() (hyperspy.learn.mva.MVA method) _check_analytical_jacobian() (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) _check_and_get_longest_axis() (in module hyperspy.misc.signal_tools) _check_comments() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _check_deprecated_optimizer() (in module hyperspy.model) _check_navigation_mask() (hyperspy.signal.BaseSignal method) _check_parameter_linearity() (in module hyperspy._components.expression) _check_signal_mask() (hyperspy.signal.BaseSignal method) _check_the_compresion() (hyperspy.io_plugins.bruker.SFS_reader method) _classify_components() (hyperspy.models.eelsmodel.EELSModel method) _cluster_analysis() (hyperspy.learn.mva.MVA method) _compute_constant_term() (hyperspy.component.Component method) _compute_expression_part() (hyperspy._components.expression.Expression method) _constant_term (hyperspy._components.expression.Expression property) (hyperspy._components.offset.Offset property) (hyperspy.component.Component property) _convert_to_signal_dict() (in module hyperspy.io_plugins.usid_hdf5) _create_array() (hyperspy.component.Parameter method) _cycle_signal() (hyperspy.signal.BaseSignal method) _data_aligned_with_axes (hyperspy.signal.BaseSignal property) _deepcopy_with_new_data() (hyperspy.signal.BaseSignal method) _density_of_mixture() (in module hyperspy.misc.material) _disable_ext_bounding() (hyperspy.model.BaseModel method) _distances_within_cluster() (hyperspy.learn.mva.MVA method) _do_snap_position() (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) _enable_ext_bounding() (hyperspy.model.BaseModel method) _escape_square_brackets() (in module hyperspy.io) _estimate_fringe_contrast_statistical() (in module hyperspy._signals.hologram_image) _extract_hdf_dataset() (in module hyperspy.io_plugins.nexus) _fast_mean() (in module hyperspy.utils.peakfinders2D) _fast_std() (in module hyperspy.utils.peakfinders2D) _fetch_values_from_p0() (hyperspy.model.BaseModel method) _filetime_to_unix() (hyperspy.io_plugins.bruker.SFSTreeItem method) _fill_pointer_table() (hyperspy.io_plugins.bruker.SFSTreeItem method) _find_auto_scan_start_stop() (in module hyperspy.io_plugins.tvips) _find_data() (in module hyperspy.io_plugins.nexus) _find_search_keys_in_dict() (in module hyperspy.io_plugins.nexus) _fix_exclusion_keys() (in module hyperspy.io_plugins.nexus) _flat_items_to_dict() (hyperspy.io_plugins.bruker.SFS_reader method) _flatten_dict() (in module hyperspy.io_plugins.usid_hdf5) _flyback_iter() (in module hyperspy.axes) _free_parameters (hyperspy.model.BaseModel property) _freedman_bw_dask() (in module hyperspy.misc.hist_tools) _function() (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) _get_array_slices() (hyperspy.axes.BaseDataAxis method) _get_background_estimator() (in module hyperspy.signal_tools) _get_bbox_from_text_artist() (hyperspy.misc.label_position.SpectrumLabelPosition method) _get_beam_energy() (hyperspy._signals.eds.EDSSpectrum method) _get_block_pattern() (in module hyperspy.misc.utils) _get_cache_dask_chunk() (hyperspy._signals.lazy.LazySignal method) _get_central_half_limits_of_axis() (in module hyperspy.roi) _get_cluster_algorithm() (hyperspy.learn.mva.MVA method) _get_cluster_preprocessing_algorithm() (hyperspy.learn.mva.MVA method) _get_cluster_signal() (hyperspy.learn.mva.MVA method) _get_dask_chunks() (hyperspy._signals.lazy.LazySignal method) _get_data_slice() (hyperspy.axes.AxesManager method) _get_derivative() (in module hyperspy.learn.mva) _get_diff() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _get_dim_dict() (in module hyperspy.io_plugins.usid_hdf5) _get_distance_array() (hyperspy.samfire_utils.strategy.LocalStrategy method) _get_dose() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) _get_element_and_line() (in module hyperspy.misc.eds.utils) _get_emd_group_type() (hyperspy.io_plugins.emd.EMD_NCEM static method) _get_energy_xray_line() (in module hyperspy.misc.eds.utils) _get_file_handle() (hyperspy._signals.lazy.LazySignal method) _get_first_ionization_edge_energy() (hyperspy.models.eelsmodel.EELSModel method) _get_float() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _get_func_from_pos() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _get_hamamatsu_streak_description() (in module hyperspy.io_plugins.tiff) _get_html_print_items() (hyperspy.misc.utils.DictionaryTreeBrowser method) _get_indices() (hyperspy.drawing.widget.DraggableWidgetBase method) _get_int16() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _get_int32() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _get_iterpath_size() (hyperspy.axes.AxesManager method) _get_line_energy() (hyperspy._signals.eds.EDSSpectrum method) _get_lines_from_elements() (hyperspy._signals.eds.EDSSpectrum method) _get_mpl_ax() (in module hyperspy.roi) _get_nav_list() (in module hyperspy.io_plugins.nexus) _get_navigation_dimension_chunk_slice() (in module hyperspy._signals.lazy) _get_navigation_signal() (hyperspy.signal.BaseSignal method) _get_number_of_components_for_clustering() (hyperspy.learn.mva.MVA method) _get_object_dset() (hyperspy.io_plugins.hspy.HyperspyWriter static method) (hyperspy.io_plugins.zspy.ZspyWriter static method) _get_patch_bounds() (hyperspy.drawing.widget.Widget2DBase method) _get_patch_xy() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing.widget.Widget2DBase method) _get_position() (hyperspy.drawing.widget.DraggableWidgetBase method) _get_print_items() (hyperspy.misc.utils.DictionaryTreeBrowser method) _get_ranges() (hyperspy.roi.BaseROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) _get_resizer_offset() (hyperspy.drawing.widget.ResizersMixin method) _get_resizer_pos() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizersMixin method) _get_resizer_size() (hyperspy.drawing.widget.ResizersMixin method) _get_scale_unit() (in module hyperspy.io_plugins.tiff) _get_scaling_factor() (in module hyperspy.component) _get_sigma() (in module hyperspy.models.edsmodel) _get_signal_signal() (hyperspy.signal.BaseSignal method) _get_size() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) _get_step() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) _get_str() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _get_tags_dict() (in module hyperspy.io_plugins.tiff) _get_undefined_axes_list() (hyperspy.signal.BaseSignal method) _get_variance() (hyperspy.model.BaseModel method) _get_vertex() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _get_widget_type() (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) _get_width_indicator_coords() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _get_xray_lines_family() (in module hyperspy.misc.eds.utils) _get_xray_lines_in_spectral_range() (hyperspy._signals.eds.EDSSpectrum method) _getlink() (in module hyperspy.io_plugins.nexus) _guess_image_mode() (in module hyperspy.io_plugins.tvips) _i2v() (hyperspy.drawing.widget.WidgetBase method) _imagej_description() (in module hyperspy.io_plugins.tiff) _infer_file_reader() (in module hyperspy.io) _initialize_subspace() (hyperspy.learn.rpca.ORPCA method) _is_increasing_order (hyperspy.axes.BaseDataAxis property) _is_int() (in module hyperspy.io_plugins.nexus) _is_iter() (in module hyperspy.misc.model_tools) _is_linear_axis() (in module hyperspy.io_plugins.nexus) _is_numeric_data() (in module hyperspy.io_plugins.nexus) _is_streak_hamamatsu() (in module hyperspy.io_plugins.tiff) _is_valid_first_tvips_file() (in module hyperspy.io_plugins.tvips) _iter_join() (in module hyperspy.misc.model_tools) _iter_read_chunks() (hyperspy.io_plugins.bruker.SFSTreeItem method) _iter_read_compr_chunks() (hyperspy.io_plugins.bruker.SFSTreeItem method) _iterate_signal() (hyperspy.signal.BaseSignal method)

_lazy_data() (hyperspy._signals.lazy.LazySignal method) _line_profile_coordinates() (hyperspy.roi.Line2DROI static method) _linear_bin() (in module hyperspy.misc.array_tools) _linear_fit() (hyperspy.model.BaseModel method) _load_dictionary() (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.model.BaseModel method) (hyperspy.signal.BaseSignal method) _load_from_TEM_param() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) _load_metadata() (in module hyperspy.io_plugins.nexus) _lowess() (in module hyperspy.misc.lowess_smooth) _make_slices() (hyperspy.roi.BaseROI method) _map_all() (hyperspy.signal.BaseSignal method) _mass_absorption_mixture() (in module hyperspy.misc.material) _move() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _mrdivide() (in module hyperspy.learn.ornmf) _MS_parse() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _nested_get() (hyperspy.misc.utils.DictionaryTreeBrowser method) _nested_get_iter() (hyperspy.misc.utils.DictionaryTreeBrowser method) _nexus_dataset_to_signal() (in module hyperspy.io_plugins.nexus) _non_iter() (in module hyperspy.misc.model_tools) _normalize_components() (in module hyperspy.learn.mva) _not_too_long (hyperspy.samfire_utils.samfire_pool.SamfirePool property) _numba_histogram() (in module hyperspy.misc.array_tools) _on_navigate() (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.WidgetBase method) _on_navigating() (hyperspy.model.BaseModel method) _on_widget_change() (hyperspy.roi.BaseInteractiveROI method) _onmousemove() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.horizontal_line.HorizontalLineWidget method) (hyperspy.drawing._widgets.label.LabelWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing._widgets.rectangles.SquareWidget method) (hyperspy.drawing._widgets.vertical_line.VerticalLineWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) _order_axes_by_name() (in module hyperspy.io_plugins.tiff) _pack_data() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _package_values() (hyperspy.samfire_utils.strategy.GlobalStrategy method) _parse_array() (in module hyperspy.drawing.utils) _parse_axes() (hyperspy.roi.BaseROI method) _parse_axis() (hyperspy.io_plugins.emd.EMD_NCEM static method) _parse_bounds_args() (hyperspy.drawing._widgets.rectangles.RectangleWidget method) _parse_from_file() (in module hyperspy.io_plugins.nexus) _parse_image() (hyperspy.io_plugins.bruker.HyperHeader method) _parse_path() (in module hyperspy.io) _parse_signal_range_values() (hyperspy.models.model1d.Model1D method) _parse_to_file() (in module hyperspy.io_plugins.nexus) _parse_value() (hyperspy.axes.BaseDataAxis method) _parse_value_from_string() (hyperspy.axes.BaseDataAxis method) _poisson_likelihood_function() (hyperspy.models.model1d.Model1D method) _pos_changed() (hyperspy.drawing.widget.DraggableWidgetBase method) _process_dictionary() (hyperspy.misc.utils.DictionaryTreeBrowser method) _quantification_cliff_lorimer() (in module hyperspy.misc.eds.utils) _read_dataset() (hyperspy.io_plugins.emd.EMD_NCEM static method) _read_emd_version() (hyperspy.io_plugins.emd.EMD_NCEM method) _read_image() (hyperspy.io_plugins.emd.FeiEMDReader method) _read_pts() (in module hyperspy.io_plugins.jeol) _read_sur_file() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _readcube() (in module hyperspy.io_plugins.jeol) _readframe_dense() (in module hyperspy.io_plugins.jeol) _readframe_lazy() (in module hyperspy.io_plugins.jeol) _remove_background_cli() (hyperspy._signals.signal1d.Signal1D method) _remove_one_axis() (hyperspy.axes.AxesManager method) _remove_signal_range_in_pixels() (hyperspy.models.model1d.Model1D method) _requires_linear_rebin() (in module hyperspy.misc.array_tools) _reshuffle_mixed_blocks() (in module hyperspy._signals.lazy) _resize() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _resolve_dir() (in module hyperspy.misc.example_signals_loading) _rotate() (hyperspy.drawing._widgets.line2d.Line2DWidget method) _scale_data_for_clustering() (hyperspy.learn.mva.MVA method) _scott_bw_dask() (in module hyperspy.misc.hist_tools) _separate_pseudocomponents() (hyperspy._components.expression.Expression method) _serpentine_iter() (in module hyperspy.axes) _set_axis_attribute_values() (hyperspy.axes.AxesManager method) _set_boundaries() (hyperspy.model.BaseModel method) _set_default_param() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) _set_default_values() (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) _set_elements() (hyperspy.io_plugins.bruker.HyperHeader method) _set_energy_offset() (hyperspy.models.edsmodel.EDSModel method) _set_energy_resolution() (hyperspy.models.edsmodel.EDSModel method) _set_energy_scale() (hyperspy.models.edsmodel.EDSModel method) _set_float() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _set_from_widget() (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) _set_images() (hyperspy.io_plugins.bruker.HyperHeader method) _set_indices() (hyperspy.drawing.widget.DraggableWidgetBase method) _set_int32() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _set_metadata_and_original_metadata() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _set_microscope() (hyperspy.io_plugins.bruker.HyperHeader method) _set_mpfit_parameters_info() (hyperspy.model.BaseModel method) _set_p0() (hyperspy.model.BaseModel method) _set_patch() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.horizontal_line.HorizontalLineWidget method) (hyperspy.drawing._widgets.label.LabelWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.rectangles.SquareWidget method) (hyperspy.drawing._widgets.vertical_line.VerticalLineWidget method) (hyperspy.drawing.widget.ResizersMixin method) (hyperspy.drawing.widget.WidgetBase method) _set_position() (hyperspy.drawing._widgets.label.LabelWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.Widget1DBase method) _set_resizers() (hyperspy.drawing.widget.ResizersMixin method) _set_signal_range_in_pixels() (hyperspy.models.model1d.Model1D method) _set_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) _set_str() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _setup() (hyperspy.samfire.Samfire method) _setup_vfs() (hyperspy.io_plugins.bruker.SFS_reader method) _shift1D() (in module hyperspy._signals.signal1d) _size_changed() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) _slice_me() (hyperspy.axes.DataAxis method) (hyperspy.axes.FunctionalDataAxis method) (hyperspy.axes.UniformDataAxis method) _slice_target() (in module hyperspy.misc.slicing) _soft_thresh() (in module hyperspy.learn.rpca) _sort_axes() (hyperspy.axes.AxesManager method) _split_descriptor() (in module hyperspy.io_plugins.usid_hdf5) _store_data() (hyperspy.io_plugins.zspy.ZspyWriter static method) _text_split() (in module hyperspy.io_plugins.nexus) _thresh() (in module hyperspy.learn.ornmf) _to_dictionary() (hyperspy.signal.BaseSignal method) _tv_denoise_1d() (in module hyperspy.misc.tv_denoise) _tv_denoise_2d() (in module hyperspy.misc.tv_denoise) _tv_denoise_3d() (in module hyperspy.misc.tv_denoise) _twin_xray_lines_offset() (hyperspy.models.edsmodel.EDSModel method) _twin_xray_lines_scale() (hyperspy.models.edsmodel.EDSModel method) _twin_xray_lines_width() (hyperspy.models.edsmodel.EDSModel method) _twinned_parameter() (in module hyperspy.model) _unfold() (hyperspy.signal.BaseSignal method) _unpack_data() (hyperspy.io_plugins.sur.DigitalSurfHandler method) _update_database() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) _update_doc() (hyperspy.events.Events method) _update_marker() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) _update_patch_geometry() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) (hyperspy.drawing.widget.Widget2DBase method) _update_patch_position() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.horizontal_line.HorizontalLineWidget method) (hyperspy.drawing._widgets.label.LabelWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing._widgets.vertical_line.VerticalLineWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.Widget2DBase method) _update_patch_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) (hyperspy.drawing.widget.Widget2DBase method) _update_resizers() (hyperspy.drawing.widget.ResizersMixin method) _update_widgets() (hyperspy.roi.BaseInteractiveROI method) _usidataset_to_signal() (in module hyperspy.io_plugins.usid_hdf5) _v2i() (hyperspy.drawing.widget.WidgetBase method) _validate_geometry() (hyperspy.drawing._widgets.rectangles.RectangleWidget method) _validate_pos() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.label.LabelWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.Widget1DBase method) _weight_to_atomic() (in module hyperspy.misc.material) _write_nexus_attr() (in module hyperspy.io_plugins.nexus) _write_nexus_groups() (in module hyperspy.io_plugins.nexus) _write_signal() (in module hyperspy.io_plugins.nexus)

A

A (hyperspy._components.gaussianhf.GaussianHF attribute) active_components (hyperspy.model.BaseModel property) active_is_multidimensional (hyperspy.component.Component property) active_strategy (hyperspy.samfire.Samfire attribute) add() (hyperspy.events.EventSuppressor method) add_data() (hyperspy.drawing.marker.MarkerBase method) add_dictionary() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_elements() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) add_family_lines() (hyperspy.models.edsmodel.EDSModel method) add_filename_to_general() (hyperspy.io_plugins.bruker.BCF_reader method) add_gaussian_noise() (hyperspy.signal.BaseSignal method) add_jobs() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) add_key_value() (in module hyperspy.misc.utils) add_line() (hyperspy.drawing.signal1d.Signal1DFigure method) add_lines() (hyperspy._signals.eds.EDSSpectrum method) add_marker() (hyperspy.signal.BaseSignal method) add_node() (hyperspy.misc.utils.DictionaryTreeBrowser method) add_phase_ramp() (hyperspy._signals.complex_signal2d.ComplexSignal2D method) add_poissonian_noise() (hyperspy.signal.BaseSignal method) add_polynomial_background() (hyperspy.models.edsmodel.EDSModel method) add_ramp() (hyperspy._signals.signal2d.Signal2D method) add_signal() (hyperspy.io_plugins.emd.EMD method) add_signal_range() (hyperspy.models.model1d.Model1D method) add_widget() (hyperspy.roi.BaseInteractiveROI method) add_xray_lines_markers() (hyperspy._signals.eds.EDSSpectrum method) AIC() (in module hyperspy.utils.model_selection) align1D() (hyperspy._signals.signal1d.Signal1D method) align2D() (hyperspy._signals.signal2d.Signal2D method) align_zero_loss_peak() (hyperspy._signals.eels.EELSSpectrum method) amari() (in module hyperspy.misc.machine_learning.tools) amplitude (hyperspy._signals.complex_signal.ComplexSignal property) angle() (hyperspy._signals.complex_signal.ComplexSignal method) (hyperspy.roi.Line2DROI method) angle_between() (in module hyperspy.drawing._widgets.line2d) animate_legend() (in module hyperspy.drawing.utils) anyfloatin() (in module hyperspy.misc.math_tools)

aperture_function() (in module hyperspy.misc.holography.reconstruct) append() (hyperspy.model.BaseModel method) (hyperspy.models.eelsmodel.EELSModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method) (hyperspy.samfire.StrategyList method) append2pathname() (in module hyperspy.misc.io.tools) apply_apodization() (hyperspy.signal.BaseSignal method) Arctan (class in hyperspy._components.arctan) (class in hyperspy._components.eels_arctan) are_aligned() (in module hyperspy.misc.array_tools) argand_diagram() (hyperspy._signals.complex_signal.ComplexSignal method) array_to_stream() (in module hyperspy.misc.io.fei_stream_readers) Arrow (class in hyperspy.drawing._markers.arrow) as_dictionary() (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method) (hyperspy.misc.utils.DictionaryTreeBrowser method) (hyperspy.model.BaseModel method) (hyperspy.models.edsmodel.EDSModel method) (hyperspy.models.model1d.Model1D method) as_lazy() (hyperspy.signal.BaseSignal method) as_signal() (hyperspy.component.Parameter method) (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) as_signal1D() (hyperspy.signal.BaseSignal method) as_signal2D() (hyperspy.signal.BaseSignal method) assert_deep_almost_equal() (in module hyperspy.misc.test_utils) assign_current_value_to_all() (hyperspy.component.Parameter method) assign_current_values_to_all() (hyperspy.model.BaseModel method) assign_signal_subclass() (in module hyperspy.io) atomic_to_weight() (in module hyperspy.misc.material) attrsetter() (in module hyperspy.misc.utils) auto_update (hyperspy.drawing.signal1d.Signal1DLine attribute) axes_are_aligned_with_data (hyperspy.axes.AxesManager property) AxesManager (class in hyperspy.axes)

B

BackgroundRemoval (class in hyperspy.signal_tools) backup() (hyperspy.samfire.Samfire method) BaseDataAxis (class in hyperspy.axes) BaseInteractiveROI (class in hyperspy.roi) BaseModel (class in hyperspy.model) BasePointROI (class in hyperspy.roi) BaseROI (class in hyperspy.roi) BaseSetMetadataItems (class in hyperspy.signal) BaseSignal (class in hyperspy.signal) bcf_hyperspectra() (in module hyperspy.io_plugins.bruker) bcf_images() (in module hyperspy.io_plugins.bruker)

BCF_reader (class in hyperspy.io_plugins.bruker) bcf_reader() (in module hyperspy.io_plugins.bruker) BIC() (in module hyperspy.utils.model_selection) Bleasdale (class in hyperspy._components.bleasdale) blind_source_separation() (hyperspy.learn.mva.MVA method) bragg_scattering_angle() (in module hyperspy.misc.physics_tools) broadcast_signals() (in module hyperspy.misc.signal_tools) ButterworthFilter (class in hyperspy.signal_tools) button_release() (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) ByteOrderError

C

calc_real_time() (hyperspy.io_plugins.bruker.HyperHeader method) calculate_carrier_frequency() (in module hyperspy.misc.holography.tools) calibrate() (hyperspy._signals.signal1d.Signal1D method) (hyperspy._signals.signal2d.Signal2D method) calibrate_energy_axis() (hyperspy.models.edsmodel.EDSModel method) calibrate_xray_lines() (hyperspy.models.edsmodel.EDSModel method) centre_colormap_values() (in module hyperspy.drawing.utils) change_dtype() (hyperspy._signals.complex_signal.ComplexSignal method) (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method) change_strategy() (hyperspy.samfire.Samfire method) check_axes_calibration() (in module hyperspy.misc.axis_tools) check_index_valid() (hyperspy.io_plugins.bruker.BCF_reader method) check_long_string() (in module hyperspy.misc.utils) check_random_state() (in module hyperspy.misc.math_tools) chisq (hyperspy.model.BaseModel attribute) (hyperspy.models.model1d.Model1D attribute) (hyperspy.models.model2d.Model2D attribute) CircleROI (class in hyperspy.roi) CircleWidget (class in hyperspy.drawing._widgets.circle) CL_get_mass_thickness() (hyperspy._signals.eds_tem.EDSTEMSpectrum static method) clean() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) clean_peaks() (in module hyperspy.utils.peakfinders2D) close() (hyperspy.drawing.marker.MarkerBase method) (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) (hyperspy.drawing.widget.WidgetBase method) close_file() (hyperspy._signals.lazy.LazySignal method) close_right_axis() (hyperspy.drawing.signal1d.Signal1DFigure method) closest_power_of_two() (in module hyperspy.misc.utils) cluster_analysis() (hyperspy.learn.mva.MVA method) coeffcients (hyperspy._components.polynomial_deprecated.Polynomial attribute) collect_results() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) color (hyperspy.signal_tools.LineInSignal1D attribute) comments (hyperspy.io_plugins.emd.EMD attribute) CommonSignal1D (class in hyperspy._signals.common_signal1d) CommonSignal2D (class in hyperspy._signals.common_signal2d) compile_function() (hyperspy._components.expression.Expression method) ComplexSignal (class in hyperspy._signals.complex_signal) ComplexSignal1D (class in hyperspy._signals.complex_signal1d)

ComplexSignal2D (class in hyperspy._signals.complex_signal2d) Component (class in hyperspy.component) ComponentFit (class in hyperspy.models.model1d) components (hyperspy.model.BaseModel attribute) (hyperspy.models.model1d.Model1D attribute) (hyperspy.models.model2d.Model2D attribute) compute() (hyperspy._signals.lazy.LazySignal method) compute_navigator() (hyperspy._signals.lazy.LazySignal method) connect() (hyperspy.drawing.widget.DraggableWidgetBase method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) (hyperspy.drawing.widget.WidgetBase method) connect_navigate() (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.WidgetBase method) contrast_stretching() (in module hyperspy.drawing.utils) convert_to_non_uniform_axis() (hyperspy.axes.FunctionalDataAxis method) convert_to_polynomial() (in module hyperspy._components.polynomial) convert_to_uniform_axis() (hyperspy.axes.BaseDataAxis method) convert_units() (hyperspy.axes.AxesManager method) convolve_component_values() (in module hyperspy.component) coordinates (hyperspy.axes.AxesManager property) copy() (hyperspy.signal.BaseSignal method) copy_slice_from_whitelist() (in module hyperspy.misc.slicing) create_axes() (hyperspy.axes.AxesManager method) create_axis() (in module hyperspy.axes) create_figure() (in module hyperspy.drawing.utils) create_model() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.signal1d.Signal1D method) (hyperspy._signals.signal2d.Signal2D method) create_right_axis() (hyperspy.drawing.signal1d.Signal1DFigure method) create_samfire() (hyperspy.model.BaseModel method) crop() (hyperspy.axes.DataAxis method) (hyperspy.axes.FunctionalDataAxis method) (hyperspy.axes.UniformDataAxis method) (hyperspy.signal.BaseSignal method) crop_decomposition_dimension() (hyperspy.learn.mva.LearningResults method) crop_image() (hyperspy._signals.signal2d.Signal2D method) crop_signal1D() (hyperspy._signals.signal1d.Signal1D method) current_component_values (class in hyperspy.misc.model_tools) current_model_values (class in hyperspy.misc.model_tools)

D

data (hyperspy.io_plugins.semper_unf.SemperFormat attribute) (hyperspy.signal.BaseSignal property) DataAxis (class in hyperspy.axes) DataDimensionError datetime_to_serial_date() (in module hyperspy.misc.date_time_tools) decomposition() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.lazy.LazySignal method) (hyperspy.learn.mva.MVA method) decrease_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) deepcopy() (hyperspy.signal.BaseSignal method) default_traits_view() (hyperspy.component.Parameter method) default_value (hyperspy.component.NoneFloat attribute) DenseSliceCOO (class in hyperspy.misc.io.fei_stream_readers) density_of_mixture() (in module hyperspy.misc.material) derivative() (hyperspy.signal.BaseSignal method) dict2group() (hyperspy.io_plugins._hierarchical.HierarchicalWriter method) dict2sarray() (in module hyperspy.misc.array_tools) dict2signal() (in module hyperspy.io) dictionaries (hyperspy.io_plugins.emd.EMD_NCEM attribute) (hyperspy.io_plugins.emd.FeiEMDReader attribute) DictionaryTreeBrowser (class in hyperspy.misc.utils) DielectricFunction (class in hyperspy._signals.dielectric_function) diff() (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method)

DigitalMicrographReader (class in hyperspy.io_plugins.digital_micrograph) DigitalSurfHandler (class in hyperspy.io_plugins.sur) disable_adjust_position() (hyperspy.models.model1d.Model1D method) disable_background() (hyperspy.models.eelsmodel.EELSModel method) disable_edges() (hyperspy.models.eelsmodel.EELSModel method) disable_fine_structure() (hyperspy.models.eelsmodel.EELSModel method) disable_free_onset_energy() (hyperspy.models.eelsmodel.EELSModel method) disable_xray_lines() (hyperspy.models.edsmodel.EDSModel method) disconnect() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.WidgetBase method) disconnect_navigate() (hyperspy.drawing.widget.WidgetBase method) DM3DataTypeError DM3FileVersionError DM3TagError DM3TagIDError DM3TagTypeError dof (hyperspy.model.BaseModel attribute) (hyperspy.models.model1d.Model1D attribute) (hyperspy.models.model2d.Model2D attribute) Doniach (class in hyperspy._components.doniach) DoublePowerLaw (class in hyperspy._components.eels_double_power_law) DraggableWidgetBase (class in hyperspy.drawing.widget) draw_patch() (hyperspy.drawing.widget.WidgetBase method)

E

edges_at_energy() (hyperspy._signals.eels.EELSSpectrum method) EdgesRange (class in hyperspy.signal_tools) EDSConfig (class in hyperspy.defaults_parser) EDSModel (class in hyperspy.models.edsmodel) EDSSEMModel (class in hyperspy.models.edssemmodel) EDSSEMParametersUI (class in hyperspy._signals.eds_sem) EDSSEMSpectrum (class in hyperspy._signals.eds_sem) EDSSpectrum (class in hyperspy._signals.eds) EDSTEMModel (class in hyperspy.models.edstemmodel) EDSTEMParametersUI (class in hyperspy._signals.eds_tem) EDSTEMSpectrum (class in hyperspy._signals.eds_tem) edx_cross_section_to_zeta() (in module hyperspy.misc.eds.utils) eels_constant() (in module hyperspy.misc.eels.tools) EELSArctan (class in hyperspy._components.eels_arctan) EELSCLEdge (class in hyperspy._components.eels_cl_edge) EELSConfig (class in hyperspy.defaults_parser) eelsdb() (in module hyperspy.misc.eels.eelsdb) EELSModel (class in hyperspy.models.eelsmodel) EELSSpectrum (class in hyperspy._signals.eels) EELSTEMParametersUI (class in hyperspy._signals.eels) effective_angle (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) effective_angle() (in module hyperspy.misc.eels.effective_angle) effective_Z() (in module hyperspy.misc.physics_tools) electron_range() (in module hyperspy.misc.eds.utils) Ellipse (class in hyperspy.drawing._markers.ellipse) ellipticity (hyperspy._components.gaussian2d.Gaussian2D property) EMD (class in hyperspy.io_plugins.emd) EMD_NCEM (class in hyperspy.io_plugins.emd) enable_adjust_position() (hyperspy.models.model1d.Model1D method) enable_background() (hyperspy.models.eelsmodel.EELSModel method) enable_edges() (hyperspy.models.eelsmodel.EELSModel method) enable_fine_structure() (hyperspy.models.eelsmodel.EELSModel method) enable_free_onset_energy() (hyperspy.models.eelsmodel.EELSModel method) enable_xray_lines() (hyperspy.models.edsmodel.EDSModel method) energy_axis (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) energy_onset (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) ensure_directory() (in module hyperspy.misc.io.tools) ensure_parameters_in_bounds() (hyperspy.model.BaseModel method) Erf (class in hyperspy._components.error_function) estimate_background_windows() (hyperspy._signals.eds.EDSSpectrum method) estimate_elastic_scattering_intensity() (hyperspy._signals.eels.EELSSpectrum method) estimate_elastic_scattering_threshold() (hyperspy._signals.eels.EELSSpectrum method) estimate_elbow_position() (hyperspy.learn.mva.MVA method) estimate_fringe_contrast_fourier() (in module hyperspy.misc.holography.tools)

estimate_image_shift() (in module hyperspy._signals.signal2d) estimate_integration_windows() (hyperspy._signals.eds.EDSSpectrum method) estimate_map_depth() (hyperspy.io_plugins.bruker.HyperHeader method) estimate_number_of_clusters() (hyperspy.learn.mva.MVA method) estimate_parameters() (hyperspy._components.doniach.Doniach method) (hyperspy._components.exponential.Exponential method) (hyperspy._components.gaussian.Gaussian method) (hyperspy._components.gaussianhf.GaussianHF method) (hyperspy._components.lorentzian.Lorentzian method) (hyperspy._components.offset.Offset method) (hyperspy._components.pes_voigt.PESVoigt method) (hyperspy._components.polynomial.Polynomial method) (hyperspy._components.polynomial_deprecated.Polynomial method) (hyperspy._components.power_law.PowerLaw method) (hyperspy._components.skew_normal.SkewNormal method) (hyperspy._components.split_voigt.SplitVoigt method) (hyperspy._components.voigt.Voigt method) estimate_peak_width() (hyperspy._signals.signal1d.Signal1D method) estimate_poissonian_noise_variance() (hyperspy.signal.BaseSignal method) estimate_shift1D() (hyperspy._signals.signal1d.Signal1D method) estimate_shift2D() (hyperspy._signals.signal2d.Signal2D method) estimate_sideband_position() (hyperspy._signals.hologram_image.HologramImage method) (in module hyperspy.misc.holography.reconstruct) estimate_sideband_size() (hyperspy._signals.hologram_image.HologramImage method) (in module hyperspy.misc.holography.reconstruct) estimate_thickness() (hyperspy._signals.eels.EELSSpectrum method) estimate_variance_parameters() (in module hyperspy.misc.eels.tools) estimate_zero_loss_peak_centre() (hyperspy._signals.eels.EELSSpectrum method) Events (class in hyperspy.events) EventSuppressor (class in hyperspy.events) exp_decay() (in module hyperspy.samfire_utils.local_strategies) Exponential (class in hyperspy._components.exponential) export() (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.misc.utils.DictionaryTreeBrowser method) export_results() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) export_to_dictionary() (in module hyperspy.misc.export_dictionary) Expression (class in hyperspy._components.expression) ext_bounded (hyperspy.component.Parameter attribute) ext_force_positive (hyperspy.component.Parameter attribute) extend() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method) (hyperspy.samfire.StrategyList method)

F

FeiEMDReader (class in hyperspy.io_plugins.emd) FeiSpectrumStream (class in hyperspy.io_plugins.emd) fetch() (hyperspy.component.Parameter method) fetch_stored_values() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) fetch_values_from_array() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) fft() (hyperspy.signal.BaseSignal method) fft_correlation() (in module hyperspy._signals.signal2d) file_reader() (in module hyperspy.io_plugins.digital_micrograph) (in module hyperspy.io_plugins.edax) (in module hyperspy.io_plugins.emd) (in module hyperspy.io_plugins.hspy) (in module hyperspy.io_plugins.image) (in module hyperspy.io_plugins.jeol) (in module hyperspy.io_plugins.nexus) (in module hyperspy.io_plugins.ripple) (in module hyperspy.io_plugins.sur) (in module hyperspy.io_plugins.tiff) (in module hyperspy.io_plugins.tvips) (in module hyperspy.io_plugins.usid_hdf5) (in module hyperspy.io_plugins.zspy) file_writer() (in module hyperspy.io_plugins.blockfile) (in module hyperspy.io_plugins.emd) (in module hyperspy.io_plugins.hspy) (in module hyperspy.io_plugins.image) (in module hyperspy.io_plugins.nexus) (in module hyperspy.io_plugins.tiff) (in module hyperspy.io_plugins.tvips) (in module hyperspy.io_plugins.usid_hdf5) (in module hyperspy.io_plugins.zspy) filename (hyperspy.io_plugins.bruker.SFS_reader attribute) filter_butterworth() (hyperspy._signals.signal1d.Signal1D method) find_dataset_paths() (hyperspy.io_plugins.emd.EMD_NCEM class method) find_local_max() (in module hyperspy.utils.peakfinders2D) find_peaks() (hyperspy._signals.signal2d.Signal2D method) find_peaks1D_ohaver() (hyperspy._signals.signal1d.Signal1D method) find_peaks_dog() (in module hyperspy.utils.peakfinders2D) find_peaks_log() (in module hyperspy.utils.peakfinders2D) find_peaks_max() (in module hyperspy.utils.peakfinders2D) find_peaks_minmax() (in module hyperspy.utils.peakfinders2D) find_peaks_ohaver() (in module hyperspy._signals.signal1d) find_peaks_stat() (in module hyperspy.utils.peakfinders2D) find_peaks_xc() (in module hyperspy.utils.peakfinders2D)

find_peaks_zaefferer() (in module hyperspy.utils.peakfinders2D) find_subclasses() (in module hyperspy.misc.utils) fine_structure_active (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) fine_structure_coeff (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) fine_structure_smoothing (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) finish() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method) fit() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method) (hyperspy.model.BaseModel method) (hyperspy.models.eelsmodel.EELSModel method) fit_background() (hyperspy.models.edsmodel.EDSModel method) (hyperspy.models.eelsmodel.EELSModel method) fit_component() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) fix_background() (hyperspy.models.edsmodel.EDSModel method) fix_edges() (hyperspy.models.eelsmodel.EELSModel method) fix_fine_structure() (hyperspy.models.eelsmodel.EELSModel method) fix_sub_xray_lines_weight() (hyperspy.models.edsmodel.EDSModel method) fix_xray_lines_energy() (hyperspy.models.edsmodel.EDSModel method) fix_xray_lines_width() (hyperspy.models.edsmodel.EDSModel method) fold() (hyperspy.signal.BaseSignal method) fourier_log_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) fourier_ratio_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) free_background() (hyperspy.models.edsmodel.EDSModel method) free_edges() (hyperspy.models.eelsmodel.EELSModel method) free_fine_structure() (hyperspy.models.eelsmodel.EELSModel method) free_sub_xray_lines_weight() (hyperspy.models.edsmodel.EDSModel method) free_xray_lines_energy() (hyperspy.models.edsmodel.EDSModel method) free_xray_lines_width() (hyperspy.models.edsmodel.EDSModel method) freq_array() (in module hyperspy.misc.holography.reconstruct) from_signal() (hyperspy.io_plugins.semper_unf.SemperFormat class method) fsdict() (in module hyperspy.misc.utils) function() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._components.split_voigt.SplitVoigt method) function_nd() (hyperspy._components.eels_double_power_law.DoublePowerLaw method) (hyperspy._components.expression.Expression method) (hyperspy._components.offset.Offset method) (hyperspy._components.pes_core_line_shape.PESCoreLineShape method) (hyperspy._components.polynomial_deprecated.Polynomial method) (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) (hyperspy._components.split_voigt.SplitVoigt method) FunctionalDataAxis (class in hyperspy.axes) fwhm (hyperspy._components.gaussian.Gaussian attribute)

G

Gaussian (class in hyperspy._components.gaussian) Gaussian2D (class in hyperspy._components.gaussian2d) gaussian_filter() (hyperspy._signals.signal1d.Signal1D method) GaussianHF (class in hyperspy._components.gaussianhf) GeneralConfig (class in hyperspy.defaults_parser) generate_subshells() (hyperspy._signals.eels.EELSSpectrum method) generate_uniform_axis() (in module hyperspy.axes) generate_values() (hyperspy.samfire.Samfire method) GeneratorLen (class in hyperspy.axes) get_abs_corr_cross_section() (in module hyperspy.misc.eds.utils) get_abs_corr_zeta() (in module hyperspy.misc.eds.utils) get_acq_instrument_dict() (hyperspy.io_plugins.bruker.HyperHeader method) get_array_memory_size_in_GiB() (in module hyperspy.misc.array_tools) get_array_module() (in module hyperspy.misc.utils) get_as_BytesIO_string() (hyperspy.io_plugins.bruker.SFSTreeItem method) get_atomic_resolution_tem_signal2d() (in module hyperspy.datasets.artificial_data) get_bss_model() (hyperspy.learn.mva.MVA method) get_calibration_from() (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) get_calibration_from_position() (in module hyperspy.io_plugins.fei) get_centre() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_centre_index() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_chunk_size() (hyperspy._signals.lazy.LazySignal method) get_complementary_edges() (hyperspy._signals.eels.EELSSpectrum method) get_consistent_min_channels() (hyperspy.io_plugins.bruker.HyperHeader method) get_core_loss_eels_line_scan_signal() (in module hyperspy.datasets.artificial_data) get_core_loss_eels_model() (in module hyperspy.datasets.artificial_data) get_core_loss_eels_signal() (in module hyperspy.datasets.artificial_data) get_current_signal() (hyperspy.signal.BaseSignal method) get_date_time_from_metadata() (in module hyperspy.misc.date_time_tools) get_decomposition_model() (hyperspy.learn.mva.MVA method) get_default_header() (in module hyperspy.io_plugins.blockfile) get_dimensions_from_data() (hyperspy.signal.BaseSignal method) get_edges_near_energy() (in module hyperspy.misc.eels.tools) get_explained_variance_ratio() (hyperspy.learn.mva.MVA method) get_file() (hyperspy.io_plugins.bruker.SFS_reader method) get_fine_structure_as_signal1D() (hyperspy._components.eels_cl_edge.EELSCLEdge method) get_format_version() (hyperspy.io_plugins._hierarchical.HierarchicalReader method) get_FWHM_at_Energy() (in module hyperspy.misc.eds.utils) get_histogram() (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method) get_image_dictionaries() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) get_info_from_edges() (in module hyperspy.misc.eels.tools) get_ipr_dtype_list() (in module hyperspy.io_plugins.edax) get_ipython() (in module hyperspy.misc.ipython_tools) get_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) get_iter_and_properties() (hyperspy.io_plugins.bruker.SFSTreeItem method) get_line_length() (hyperspy.drawing._widgets.line2d.Line2DWidget method) get_linear_interpolation() (in module hyperspy.misc.math_tools) get_lines_intensity() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy.models.edsmodel.EDSModel method) get_low_loss_eels_line_scan_signal() (in module hyperspy.datasets.artificial_data) get_low_loss_eels_signal() (in module hyperspy.datasets.artificial_data) get_luminescence_signal() (in module hyperspy.datasets.artificial_data) get_markers() (hyperspy.misc.label_position.SpectrumLabelPosition method) get_noise_variance() (hyperspy.signal.BaseSignal method)

get_number_of_effective_electrons() (hyperspy._signals.dielectric_function.DielectricFunction method) get_numpy_kwargs() (in module hyperspy.misc.utils) get_object_package_info() (in module hyperspy.misc.utils) get_probe_area() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) get_qaxis_and_gos() (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) get_signal_chunk_slice() (in module hyperspy.misc.array_tools) get_signal_chunks() (in module hyperspy.io_plugins._hierarchical) get_size_in_indices() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) get_spc_dtype_list() (in module hyperspy.io_plugins.edax) get_spd_dtype_list() (in module hyperspy.io_plugins.edax) get_spectra_metadata() (hyperspy.io_plugins.bruker.HyperHeader method) get_take_off_angle() (hyperspy._signals.eds.EDSSpectrum method) get_xray_lines_near_energy() (in module hyperspy.misc.eds.utils) get_zero_loss_peak_mask() (hyperspy._signals.eels.EELSSpectrum method) GlobalStrategy (class in hyperspy.samfire_utils.strategy) grad_a() (hyperspy._components.bleasdale.Bleasdale method) grad_A() (hyperspy._components.pes_see.SEE method) grad_b() (hyperspy._components.bleasdale.Bleasdale method) grad_c() (hyperspy._components.bleasdale.Bleasdale method) grad_one_coefficient() (hyperspy._components.polynomial_deprecated.Polynomial method) grad_Phi() (hyperspy._components.pes_see.SEE method) group2signaldict() (hyperspy.io_plugins._hierarchical.HierarchicalReader method) guess_mode() (in module hyperspy.io_plugins.bruker) guess_output_signal_size() (in module hyperspy.misc.utils) gui() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) (hyperspy._signals.eds_sem.EDSSEMParametersUI method) (hyperspy._signals.eds_tem.EDSTEMParametersUI method) (hyperspy._signals.eels.EELSTEMParametersUI method) (hyperspy.axes.AxesManager method) (hyperspy.axes.BaseDataAxis method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.defaults_parser.Preferences method) (hyperspy.model.BaseModel method) (hyperspy.models.model1d.ComponentFit method) (hyperspy.roi.CircleROI method) (hyperspy.roi.Line2DROI method) (hyperspy.roi.Point1DROI method) (hyperspy.roi.Point2DROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) (hyperspy.signal_tools.BackgroundRemoval method) (hyperspy.signal_tools.ButterworthFilter method) (hyperspy.signal_tools.EdgesRange method) (hyperspy.signal_tools.ImageContrastEditor method) (hyperspy.signal_tools.IntegrateArea method) (hyperspy.signal_tools.PeaksFinder2D method) (hyperspy.signal_tools.Signal1DCalibration method) (hyperspy.signal_tools.Signal2DCalibration method) (hyperspy.signal_tools.SimpleMessage method) (hyperspy.signal_tools.SmoothingLowess method) (hyperspy.signal_tools.SmoothingSavitzkyGolay method) (hyperspy.signal_tools.SmoothingTV method) (hyperspy.signal_tools.SpikesRemovalInteractive method) gui_navigation_sliders() (hyperspy.axes.AxesManager method) GUIs (class in hyperspy.defaults_parser)

H

hann_window_nth_order() (in module hyperspy.misc.math_tools) hanning2d() (in module hyperspy._signals.signal2d) hanning_taper() (hyperspy._signals.signal1d.Signal1D method) HartreeSlaterGOS (class in hyperspy.misc.eels.hartree_slater_gos) has_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) has_pool (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool property) HeavisideStep (class in hyperspy._components.heaviside) height (hyperspy._components.gaussian.Gaussian attribute) (hyperspy._components.gaussian2d.Gaussian2D property) (hyperspy.roi.RectangularROI property) HierarchicalReader (class in hyperspy.io_plugins._hierarchical) HierarchicalWriter (class in hyperspy.io_plugins._hierarchical) histogram() (in module hyperspy.misc.hist_tools) histogram_dask() (in module hyperspy.misc.hist_tools) HistogramSegmenter (class in hyperspy.samfire_utils.segmenters.histogram) HistogramStrategy (class in hyperspy.samfire_utils.global_strategies) HologramImage (class in hyperspy._signals.hologram_image) homogenize_ndim() (in module hyperspy.misc.array_tools) HorizontalLine (class in hyperspy.drawing._markers.horizontal_line) HorizontalLineSegment (class in hyperspy.drawing._markers.horizontal_line_segment) HorizontalLineWidget (class in hyperspy.drawing._widgets.horizontal_line) HydrogenicGOS (class in hyperspy.misc.eels.hydrogenic_gos) HyperHeader (class in hyperspy.io_plugins.bruker) hyperspy module hyperspy._components module hyperspy._components.arctan module hyperspy._components.bleasdale module hyperspy._components.doniach module hyperspy._components.eels_arctan module hyperspy._components.eels_cl_edge module hyperspy._components.eels_double_power_law module hyperspy._components.eels_vignetting module hyperspy._components.error_function module hyperspy._components.exponential module hyperspy._components.expression module hyperspy._components.gaussian module hyperspy._components.gaussian2d module hyperspy._components.gaussianhf module hyperspy._components.heaviside module hyperspy._components.logistic module hyperspy._components.lorentzian module hyperspy._components.offset module hyperspy._components.pes_core_line_shape module hyperspy._components.pes_see module hyperspy._components.pes_voigt module hyperspy._components.polynomial module hyperspy._components.polynomial_deprecated module hyperspy._components.power_law module hyperspy._components.rc module hyperspy._components.scalable_fixed_pattern module hyperspy._components.skew_normal module hyperspy._components.split_voigt module hyperspy._components.voigt module hyperspy._components.volume_plasmon_drude module hyperspy._lazy_signals module hyperspy._signals module hyperspy._signals.common_signal1d module hyperspy._signals.common_signal2d module hyperspy._signals.complex_signal module hyperspy._signals.complex_signal1d module hyperspy._signals.complex_signal2d module hyperspy._signals.dielectric_function module hyperspy._signals.eds module hyperspy._signals.eds_sem module hyperspy._signals.eds_tem module hyperspy._signals.eels module hyperspy._signals.hologram_image module hyperspy._signals.lazy module hyperspy._signals.signal1d module hyperspy._signals.signal2d module hyperspy.api module hyperspy.api_nogui module hyperspy.axes module hyperspy.component module hyperspy.components1d module hyperspy.components2d module hyperspy.datasets module hyperspy.datasets.artificial_data module hyperspy.datasets.example_signals module hyperspy.decorators module hyperspy.defaults_parser module hyperspy.docstrings module hyperspy.docstrings.model module hyperspy.docstrings.parameters module hyperspy.docstrings.plot module hyperspy.docstrings.signal module hyperspy.docstrings.signal1d module hyperspy.docstrings.utils module hyperspy.drawing module hyperspy.drawing._markers module hyperspy.drawing._markers.arrow module hyperspy.drawing._markers.ellipse module hyperspy.drawing._markers.horizontal_line module hyperspy.drawing._markers.horizontal_line_segment module hyperspy.drawing._markers.line_segment module hyperspy.drawing._markers.point module hyperspy.drawing._markers.rectangle module hyperspy.drawing._markers.text module hyperspy.drawing._markers.vertical_line module hyperspy.drawing._markers.vertical_line_segment module hyperspy.drawing._widgets module hyperspy.drawing._widgets.circle module hyperspy.drawing._widgets.horizontal_line module hyperspy.drawing._widgets.label module hyperspy.drawing._widgets.line2d module hyperspy.drawing._widgets.range module hyperspy.drawing._widgets.rectangles module hyperspy.drawing._widgets.scalebar module hyperspy.drawing._widgets.vertical_line module hyperspy.drawing.figure module hyperspy.drawing.image module hyperspy.drawing.marker module hyperspy.drawing.mpl_he module hyperspy.drawing.mpl_hie module hyperspy.drawing.mpl_hse module hyperspy.drawing.signal module hyperspy.drawing.signal1d module hyperspy.drawing.tiles module hyperspy.drawing.utils module hyperspy.drawing.widget module hyperspy.drawing.widgets module hyperspy.events module hyperspy.exceptions module hyperspy.extensions module hyperspy.interactive module hyperspy.io module hyperspy.io_plugins module hyperspy.io_plugins._hierarchical module hyperspy.io_plugins.blockfile module hyperspy.io_plugins.bruker module

hyperspy.io_plugins.dens module hyperspy.io_plugins.digital_micrograph module hyperspy.io_plugins.edax module hyperspy.io_plugins.emd module hyperspy.io_plugins.empad module hyperspy.io_plugins.fei module hyperspy.io_plugins.hspy module hyperspy.io_plugins.image module hyperspy.io_plugins.impulse module hyperspy.io_plugins.jeol module hyperspy.io_plugins.mrc module hyperspy.io_plugins.mrcz module hyperspy.io_plugins.msa module hyperspy.io_plugins.netcdf module hyperspy.io_plugins.nexus module hyperspy.io_plugins.phenom module hyperspy.io_plugins.protochips module hyperspy.io_plugins.ripple module hyperspy.io_plugins.semper_unf module hyperspy.io_plugins.sur module hyperspy.io_plugins.tiff module hyperspy.io_plugins.tvips module hyperspy.io_plugins.usid_hdf5 module hyperspy.io_plugins.zspy module hyperspy.learn module hyperspy.learn.mlpca module hyperspy.learn.mva module hyperspy.learn.ornmf module hyperspy.learn.orthomax module hyperspy.learn.rpca module hyperspy.learn.svd_pca module hyperspy.learn.whitening module hyperspy.logger module hyperspy.misc module hyperspy.misc.array_tools module hyperspy.misc.axis_tools module hyperspy.misc.config_dir module hyperspy.misc.date_time_tools module hyperspy.misc.eds module hyperspy.misc.eds.ffast_mac module hyperspy.misc.eds.utils module hyperspy.misc.eels module hyperspy.misc.eels.base_gos module hyperspy.misc.eels.eelsdb module hyperspy.misc.eels.effective_angle module hyperspy.misc.eels.electron_inelastic_mean_free_path module hyperspy.misc.eels.hartree_slater_gos module hyperspy.misc.eels.hydrogenic_gos module hyperspy.misc.eels.tools module hyperspy.misc.elements module hyperspy.misc.example_signals_loading module hyperspy.misc.export_dictionary module hyperspy.misc.hist_tools module hyperspy.misc.holography module hyperspy.misc.holography.reconstruct module hyperspy.misc.holography.tools module hyperspy.misc.io module hyperspy.misc.io.fei_stream_readers module hyperspy.misc.io.tools module hyperspy.misc.io.utils_readfile module hyperspy.misc.ipython_tools module hyperspy.misc.label_position module hyperspy.misc.lowess_smooth module hyperspy.misc.machine_learning module hyperspy.misc.machine_learning.import_sklearn module hyperspy.misc.machine_learning.tools module hyperspy.misc.material module hyperspy.misc.math_tools module hyperspy.misc.model_tools module hyperspy.misc.physics_tools module hyperspy.misc.rgb_tools module hyperspy.misc.signal_tools module hyperspy.misc.slicing module hyperspy.misc.test_utils module hyperspy.misc.tv_denoise module hyperspy.misc.utils module hyperspy.model module hyperspy.models module hyperspy.models.edsmodel module hyperspy.models.edssemmodel module hyperspy.models.edstemmodel module hyperspy.models.eelsmodel module hyperspy.models.model1d module hyperspy.models.model2d module hyperspy.Release module hyperspy.roi module hyperspy.samfire module hyperspy.samfire_utils module hyperspy.samfire_utils.fit_tests module hyperspy.samfire_utils.global_strategies module hyperspy.samfire_utils.goodness_of_fit_tests module hyperspy.samfire_utils.goodness_of_fit_tests.information_theory module hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq module hyperspy.samfire_utils.goodness_of_fit_tests.test_general module hyperspy.samfire_utils.local_strategies module hyperspy.samfire_utils.samfire_kernel module hyperspy.samfire_utils.samfire_pool module hyperspy.samfire_utils.samfire_worker module hyperspy.samfire_utils.segmenters module hyperspy.samfire_utils.segmenters.histogram module hyperspy.samfire_utils.strategy module hyperspy.samfire_utils.weights module hyperspy.samfire_utils.weights.red_chisq module hyperspy.signal module hyperspy.signal_tools module hyperspy.signals module hyperspy.ui_registry module hyperspy.utils module hyperspy.utils.eds module hyperspy.utils.markers module hyperspy.utils.material module hyperspy.utils.model module hyperspy.utils.model_selection module hyperspy.utils.parallel_pool module hyperspy.utils.peakfinders2D module hyperspy.utils.plot module hyperspy.utils.roi module hyperspy.utils.samfire module HyperspyReader (class in hyperspy.io_plugins.hspy) HyperspyWriter (class in hyperspy.io_plugins.hspy)

I

ifft() (hyperspy.signal.BaseSignal method) im_type (hyperspy.io_plugins.emd.FeiEMDReader attribute) imag (hyperspy._signals.complex_signal.ComplexSignal property) ImageContrastEditor (class in hyperspy.signal_tools) ImageIDError ImageModeError iMFP_angular_correction() (in module hyperspy.misc.eels.electron_inelastic_mean_free_path) iMFP_Iakoubovskii() (in module hyperspy.misc.eels.electron_inelastic_mean_free_path) iMFP_TPP2M() (in module hyperspy.misc.eels.electron_inelastic_mean_free_path) increase_size() (hyperspy.drawing._widgets.circle.CircleWidget method) (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) incremental_filename() (in module hyperspy.misc.io.tools) indexmax() (hyperspy.signal.BaseSignal method) indexmin() (hyperspy.signal.BaseSignal method) indices (hyperspy.axes.AxesManager property) init_parameters() (hyperspy.component.Component method) insert() (hyperspy.model.BaseModel method) integral_as_signal() (hyperspy._components.gaussianhf.GaussianHF method) integrate1D() (hyperspy.signal.BaseSignal method) integrate_in_range() (hyperspy._signals.signal1d.Signal1D method) integrate_simpson() (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method) IntegrateArea (class in hyperspy.signal_tools) intensity (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) Interactive (class in hyperspy.interactive)

interactive() (hyperspy.roi.BaseInteractiveROI method) (in module hyperspy.interactive) interpolate_in_between() (hyperspy._signals.signal1d.Signal1D method) interpret() (in module hyperspy.io_plugins.bruker) ipython_kwargs (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) is_active (hyperspy.drawing.mpl_he.MPL_HyperExplorer property) is_binned() (in module hyperspy.misc.utils) is_cupy_array() (in module hyperspy.misc.utils) is_EMD_NCEM() (in module hyperspy.io_plugins.emd) is_EMD_Velox() (in module hyperspy.io_plugins.emd) is_hyperspy_signal() (in module hyperspy.misc.utils) is_ipyparallel (hyperspy.utils.parallel_pool.ParallelPool property) is_multiprocessing (hyperspy.utils.parallel_pool.ParallelPool property) is_on (hyperspy.drawing.widget.WidgetBase property) is_rgb (hyperspy.signal.BaseSignal property) is_rgba (hyperspy.signal.BaseSignal property) is_rgbx (hyperspy.signal.BaseSignal property) is_valid() (hyperspy.roi.BaseROI method) (hyperspy.roi.CircleROI method) (hyperspy.roi.RectangularROI method) (hyperspy.roi.SpanROI method) isfloat() (in module hyperspy.misc.math_tools) ISO_format_to_serial_date() (in module hyperspy.misc.date_time_tools) iterpath (hyperspy.axes.AxesManager property)

K

key_navigator() (hyperspy.axes.AxesManager method)

keys() (hyperspy.misc.utils.DictionaryTreeBrowser method) kramers_kronig_analysis() (hyperspy._signals.eels.EELSSpectrum method)

L

LabelWidget (class in hyperspy.drawing._widgets.label) LazyComplexSignal (class in hyperspy._signals.complex_signal) LazyComplexSignal1D (class in hyperspy._signals.complex_signal1d) LazyComplexSignal2D (class in hyperspy._signals.complex_signal2d) LazyCupyConversion LazyDielectricFunction (class in hyperspy._signals.dielectric_function) LazyEDSSEMSpectrum (class in hyperspy._signals.eds_sem) LazyEDSSpectrum (class in hyperspy._signals.eds) LazyEDSTEMSpectrum (class in hyperspy._signals.eds_tem) LazyEELSSpectrum (class in hyperspy._signals.eels) LazyHologramImage (class in hyperspy._signals.hologram_image) LazySignal (class in hyperspy._signals.lazy) LazySignal1D (class in hyperspy._signals.signal1d) LazySignal2D (class in hyperspy._signals.signal2d) LearningResults (class in hyperspy.learn.mva) left_cutoff (hyperspy._components.eels_double_power_law.DoublePowerLaw attribute) (hyperspy._components.power_law.PowerLaw attribute) Line2DROI (class in hyperspy.roi) Line2DWidget (class in hyperspy.drawing._widgets.line2d) line_properties (hyperspy.drawing.signal1d.Signal1DLine attribute) LineInSignal1D (class in hyperspy.signal_tools) LineInSignal2D (class in hyperspy.signal_tools)

LineSegment (class in hyperspy.drawing._markers.line_segment) list_datasets_in_file() (in module hyperspy.io_plugins.nexus) Load (class in hyperspy.signal_tools) load() (hyperspy.learn.mva.LearningResults method) (in module hyperspy.io) load_1D_EDS_SEM_spectrum() (in module hyperspy.misc.example_signals_loading) load_1D_EDS_TEM_spectrum() (in module hyperspy.misc.example_signals_loading) load_from_dictionary() (in module hyperspy.misc.export_dictionary) load_from_emd() (hyperspy.io_plugins.emd.EMD class method) load_from_unf() (hyperspy.io_plugins.semper_unf.SemperFormat class method) load_object_hologram() (in module hyperspy.misc.example_signals_loading) load_parameters_from_file() (hyperspy.model.BaseModel method) load_reference_hologram() (in module hyperspy.misc.example_signals_loading) load_single_file() (in module hyperspy.io) load_with_reader() (in module hyperspy.io) LocalStrategy (class in hyperspy.samfire_utils.strategy) log() (hyperspy.samfire.Samfire method) log_info() (hyperspy.io_plugins.emd.EMD method) (hyperspy.io_plugins.semper_unf.SemperFormat method) Logistic (class in hyperspy._components.logistic) Lorentzian (class in hyperspy._components.lorentzian) lowess() (in module hyperspy.misc.lowess_smooth)

M

make_cmap() (in module hyperspy.drawing.utils) make_sure_ind() (in module hyperspy.samfire_utils.strategy) map() (hyperspy.signal.BaseSignal method) marker_properties (hyperspy.drawing.marker.MarkerBase attribute) MarkerBase (class in hyperspy.drawing.marker) mass_absorption_coefficient() (in module hyperspy.misc.material) mass_absorption_mixture() (in module hyperspy.misc.material) max() (hyperspy.signal.BaseSignal method) mean (hyperspy._components.skew_normal.SkewNormal property) mean() (hyperspy.signal.BaseSignal method) metadata (hyperspy.io_plugins.semper_unf.SemperFormat attribute) (hyperspy.samfire.Samfire attribute) (hyperspy.signal.BaseSignal property) microscope (hyperspy.io_plugins.emd.EMD attribute) min() (hyperspy.signal.BaseSignal method) MissingParametersError mlpca() (in module hyperspy.learn.mlpca) mode (hyperspy._components.skew_normal.SkewNormal property) model (hyperspy.samfire.Samfire attribute) Model1D (class in hyperspy.models.model1d) Model2D (class in hyperspy.models.model2d) ModelComponents (class in hyperspy.model) ModelManager (class in hyperspy.signal) module hyperspy hyperspy._components hyperspy._components.arctan hyperspy._components.bleasdale hyperspy._components.doniach hyperspy._components.eels_arctan hyperspy._components.eels_cl_edge hyperspy._components.eels_double_power_law hyperspy._components.eels_vignetting hyperspy._components.error_function hyperspy._components.exponential hyperspy._components.expression hyperspy._components.gaussian hyperspy._components.gaussian2d hyperspy._components.gaussianhf hyperspy._components.heaviside hyperspy._components.logistic hyperspy._components.lorentzian hyperspy._components.offset hyperspy._components.pes_core_line_shape hyperspy._components.pes_see hyperspy._components.pes_voigt hyperspy._components.polynomial hyperspy._components.polynomial_deprecated hyperspy._components.power_law hyperspy._components.rc hyperspy._components.scalable_fixed_pattern hyperspy._components.skew_normal hyperspy._components.split_voigt hyperspy._components.voigt hyperspy._components.volume_plasmon_drude hyperspy._lazy_signals hyperspy._signals hyperspy._signals.common_signal1d hyperspy._signals.common_signal2d hyperspy._signals.complex_signal hyperspy._signals.complex_signal1d hyperspy._signals.complex_signal2d hyperspy._signals.dielectric_function hyperspy._signals.eds hyperspy._signals.eds_sem hyperspy._signals.eds_tem hyperspy._signals.eels hyperspy._signals.hologram_image hyperspy._signals.lazy hyperspy._signals.signal1d hyperspy._signals.signal2d hyperspy.api hyperspy.api_nogui hyperspy.axes hyperspy.component hyperspy.components1d hyperspy.components2d hyperspy.datasets hyperspy.datasets.artificial_data hyperspy.datasets.example_signals hyperspy.decorators hyperspy.defaults_parser hyperspy.docstrings hyperspy.docstrings.model hyperspy.docstrings.parameters hyperspy.docstrings.plot hyperspy.docstrings.signal hyperspy.docstrings.signal1d hyperspy.docstrings.utils hyperspy.drawing hyperspy.drawing._markers hyperspy.drawing._markers.arrow hyperspy.drawing._markers.ellipse hyperspy.drawing._markers.horizontal_line hyperspy.drawing._markers.horizontal_line_segment hyperspy.drawing._markers.line_segment hyperspy.drawing._markers.point hyperspy.drawing._markers.rectangle hyperspy.drawing._markers.text hyperspy.drawing._markers.vertical_line hyperspy.drawing._markers.vertical_line_segment hyperspy.drawing._widgets hyperspy.drawing._widgets.circle hyperspy.drawing._widgets.horizontal_line hyperspy.drawing._widgets.label hyperspy.drawing._widgets.line2d hyperspy.drawing._widgets.range hyperspy.drawing._widgets.rectangles hyperspy.drawing._widgets.scalebar hyperspy.drawing._widgets.vertical_line hyperspy.drawing.figure hyperspy.drawing.image hyperspy.drawing.marker hyperspy.drawing.mpl_he hyperspy.drawing.mpl_hie hyperspy.drawing.mpl_hse hyperspy.drawing.signal hyperspy.drawing.signal1d hyperspy.drawing.tiles hyperspy.drawing.utils hyperspy.drawing.widget hyperspy.drawing.widgets hyperspy.events hyperspy.exceptions hyperspy.extensions hyperspy.interactive hyperspy.io hyperspy.io_plugins hyperspy.io_plugins._hierarchical hyperspy.io_plugins.blockfile hyperspy.io_plugins.bruker hyperspy.io_plugins.dens hyperspy.io_plugins.digital_micrograph hyperspy.io_plugins.edax hyperspy.io_plugins.emd hyperspy.io_plugins.empad hyperspy.io_plugins.fei hyperspy.io_plugins.hspy hyperspy.io_plugins.image hyperspy.io_plugins.impulse hyperspy.io_plugins.jeol hyperspy.io_plugins.mrc hyperspy.io_plugins.mrcz hyperspy.io_plugins.msa hyperspy.io_plugins.netcdf hyperspy.io_plugins.nexus hyperspy.io_plugins.phenom hyperspy.io_plugins.protochips hyperspy.io_plugins.ripple hyperspy.io_plugins.semper_unf hyperspy.io_plugins.sur hyperspy.io_plugins.tiff hyperspy.io_plugins.tvips hyperspy.io_plugins.usid_hdf5 hyperspy.io_plugins.zspy hyperspy.learn hyperspy.learn.mlpca hyperspy.learn.mva hyperspy.learn.ornmf hyperspy.learn.orthomax hyperspy.learn.rpca hyperspy.learn.svd_pca hyperspy.learn.whitening hyperspy.logger hyperspy.misc hyperspy.misc.array_tools hyperspy.misc.axis_tools hyperspy.misc.config_dir hyperspy.misc.date_time_tools hyperspy.misc.eds hyperspy.misc.eds.ffast_mac hyperspy.misc.eds.utils hyperspy.misc.eels hyperspy.misc.eels.base_gos hyperspy.misc.eels.eelsdb hyperspy.misc.eels.effective_angle hyperspy.misc.eels.electron_inelastic_mean_free_path hyperspy.misc.eels.hartree_slater_gos hyperspy.misc.eels.hydrogenic_gos hyperspy.misc.eels.tools hyperspy.misc.elements hyperspy.misc.example_signals_loading hyperspy.misc.export_dictionary hyperspy.misc.hist_tools hyperspy.misc.holography hyperspy.misc.holography.reconstruct hyperspy.misc.holography.tools hyperspy.misc.io hyperspy.misc.io.fei_stream_readers hyperspy.misc.io.tools hyperspy.misc.io.utils_readfile hyperspy.misc.ipython_tools hyperspy.misc.label_position hyperspy.misc.lowess_smooth hyperspy.misc.machine_learning hyperspy.misc.machine_learning.import_sklearn hyperspy.misc.machine_learning.tools hyperspy.misc.material hyperspy.misc.math_tools hyperspy.misc.model_tools hyperspy.misc.physics_tools hyperspy.misc.rgb_tools hyperspy.misc.signal_tools hyperspy.misc.slicing hyperspy.misc.test_utils hyperspy.misc.tv_denoise hyperspy.misc.utils hyperspy.model hyperspy.models hyperspy.models.edsmodel hyperspy.models.edssemmodel hyperspy.models.edstemmodel hyperspy.models.eelsmodel hyperspy.models.model1d hyperspy.models.model2d hyperspy.Release hyperspy.roi hyperspy.samfire hyperspy.samfire_utils hyperspy.samfire_utils.fit_tests hyperspy.samfire_utils.global_strategies hyperspy.samfire_utils.goodness_of_fit_tests hyperspy.samfire_utils.goodness_of_fit_tests.information_theory hyperspy.samfire_utils.goodness_of_fit_tests.red_chisq hyperspy.samfire_utils.goodness_of_fit_tests.test_general hyperspy.samfire_utils.local_strategies hyperspy.samfire_utils.samfire_kernel hyperspy.samfire_utils.samfire_pool hyperspy.samfire_utils.samfire_worker hyperspy.samfire_utils.segmenters hyperspy.samfire_utils.segmenters.histogram hyperspy.samfire_utils.strategy hyperspy.samfire_utils.weights hyperspy.samfire_utils.weights.red_chisq hyperspy.signal hyperspy.signal_tools hyperspy.signals hyperspy.ui_registry hyperspy.utils hyperspy.utils.eds hyperspy.utils.markers hyperspy.utils.material hyperspy.utils.model hyperspy.utils.model_selection hyperspy.utils.parallel_pool hyperspy.utils.peakfinders2D hyperspy.utils.plot hyperspy.utils.roi hyperspy.utils.samfire

most_frequent() (hyperspy.samfire_utils.segmenters.histogram.HistogramSegmenter method) MountainsMapFileError MPL_HyperExplorer (class in hyperspy.drawing.mpl_he) MPL_HyperSignal1D_Explorer (class in hyperspy.drawing.mpl_hse) multifit() (hyperspy.model.BaseModel method) multiply() (in module hyperspy.misc.utils) MVA (class in hyperspy.learn.mva)

N

nanmax() (hyperspy.signal.BaseSignal method) nanmean() (hyperspy.signal.BaseSignal method) nanmin() (hyperspy.signal.BaseSignal method) nanstd() (hyperspy.signal.BaseSignal method) nansum() (hyperspy.signal.BaseSignal method) nanvar() (hyperspy.signal.BaseSignal method) navigation_axes (hyperspy.axes.AxesManager property) navigation_dimension (hyperspy.axes.AxesManager property) navigation_shape (hyperspy.axes.AxesManager property) navigation_size (hyperspy.axes.AxesManager property) NavigationDimensionError NavigationSizeError ndindex_nat (class in hyperspy.axes)

nearest_indices() (in module hyperspy.samfire_utils.strategy) need_pixels (hyperspy.samfire_utils.samfire_pool.SamfirePool property) nested_dictionary_merge() (in module hyperspy.misc.utils) NoInteractiveError NoneFloat (class in hyperspy.component) normalize_bss_components() (hyperspy.learn.mva.MVA method) normalize_decomposition_components() (hyperspy.learn.mva.MVA method) normalize_poissonian_noise() (hyperspy.learn.mva.MVA method) num_workers (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) numba_closest_index_ceil() (in module hyperspy.misc.array_tools) numba_closest_index_floor() (in module hyperspy.misc.array_tools) numba_closest_index_round() (in module hyperspy.misc.array_tools) numba_histogram() (in module hyperspy.misc.array_tools)

O

Offset (class in hyperspy._components.offset) offsets (hyperspy.io_plugins.semper_unf.SemperFormat attribute) on (hyperspy.signal_tools.LineInSignal1D attribute) on_figure_window_close() (in module hyperspy.drawing.utils) onpick() (hyperspy.drawing._widgets.line2d.Line2DWidget method) (hyperspy.drawing.widget.ResizersMixin method) onset_energy (hyperspy._components.eels_cl_edge.EELSCLEdge attribute) optimal_fft_size() (in module hyperspy.misc.math_tools) optional_components (hyperspy.samfire.Samfire attribute) order_of_magnitude() (in module hyperspy.misc.math_tools)

ordinal() (in module hyperspy.misc.utils) original_metadata (hyperspy.signal.BaseSignal property) ORNMF (class in hyperspy.learn.ornmf) ornmf() (in module hyperspy.learn.ornmf) ORPCA (class in hyperspy.learn.rpca) orpca() (in module hyperspy.learn.rpca) orthomax() (in module hyperspy.learn.orthomax) outer_nd() (in module hyperspy.misc.math_tools) overwrite() (in module hyperspy.misc.io.tools) overwrite_dataset() (hyperspy.io_plugins._hierarchical.HierarchicalWriter class method)

P

pack_to_intbytes() (in module hyperspy.io_plugins.semper_unf) ParallelPool (class in hyperspy.utils.parallel_pool) Parameter (class in hyperspy.component) parametrize_GOS() (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS method) parse() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) parse_array_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_hypermap() (hyperspy.io_plugins.bruker.BCF_reader method) parse_line() (in module hyperspy.io_plugins.bruker) parse_msa_string() (in module hyperspy.io_plugins.msa) parse_quantity() (in module hyperspy.misc.utils) parse_ripple() (in module hyperspy.io_plugins.ripple) parse_string_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_struct_definition() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_tag_group() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) parse_tags() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) PeaksFinder2D (class in hyperspy.signal_tools) PESCoreLineShape (class in hyperspy._components.pes_core_line_shape) PESVoigt (class in hyperspy._components.pes_voigt) phase (hyperspy._signals.complex_signal.ComplexSignal property) pid (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) ping (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) ping_workers() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) pixels_done (hyperspy.samfire.Samfire property) pixels_left (hyperspy.samfire.Samfire property) plot() (hyperspy._signals.complex_signal.ComplexSignal method) (hyperspy._signals.complex_signal2d.ComplexSignal2D method) (hyperspy._signals.eds.EDSSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.lazy.LazySignal method) (hyperspy._signals.signal1d.Signal1D method) (hyperspy._signals.signal2d.Signal2D method) (hyperspy.component.Component method) (hyperspy.component.Parameter method) (hyperspy.drawing.marker.MarkerBase method) (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.samfire.Samfire method) (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) (hyperspy.signal.BaseSignal method) plot_cluster_metric() (hyperspy.learn.mva.MVA method)

plot_cumulative_explained_variance_ratio() (hyperspy.learn.mva.MVA method) plot_edges_label() (hyperspy._signals.eels.EELSSpectrum method) plot_every (hyperspy.samfire.Samfire attribute) plot_explained_variance_ratio() (hyperspy.learn.mva.MVA method) plot_histogram() (hyperspy.signal_tools.ImageContrastEditor method) plot_histograms() (in module hyperspy.drawing.utils) plot_images() (in module hyperspy.drawing.utils) plot_navigator() (hyperspy.drawing.mpl_he.MPL_HyperExplorer method) plot_results() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) plot_RGB_map() (in module hyperspy.drawing.utils) plot_signals() (in module hyperspy.drawing.utils) plot_spectra() (in module hyperspy.drawing.utils) PlotConfig (class in hyperspy.defaults_parser) Point (class in hyperspy.drawing._markers.point) Point1DROI (class in hyperspy.roi) Point2DROI (class in hyperspy.roi) Polynomial (class in hyperspy._components.polynomial) (class in hyperspy._components.polynomial_deprecated) pool (hyperspy.samfire.Samfire attribute) (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) pop() (hyperspy.signal.ModelManager method) position (hyperspy.signal_tools.LineInSignal1D attribute) power_law_extrapolation() (hyperspy._signals.eels.EELSSpectrum method) PowerLaw (class in hyperspy._components.power_law) Preferences (class in hyperspy.defaults_parser) prepare_interpolator() (hyperspy._components.scalable_fixed_pattern.ScalableFixedPattern method) prepare_workers() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) print_current_values() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) print_edges_near_energy() (hyperspy._signals.eels.EELSSpectrum static method) print_html() (in module hyperspy.misc.utils) print_known_signal_types() (in module hyperspy.utils) print_summary_statistics() (hyperspy.signal.BaseSignal method) process_function_blockwise() (in module hyperspy.misc.utils) process_lazy_attributes() (hyperspy.misc.utils.DictionaryTreeBrowser method) profile_line() (hyperspy.roi.Line2DROI static method) project() (hyperspy.learn.ornmf.ORNMF method) (hyperspy.learn.rpca.ORPCA method) py_parse_hypermap() (in module hyperspy.io_plugins.bruker)

Q

qaxis (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS attribute) (hyperspy.misc.eels.hydrogenic_gos.HydrogenicGOS attribute) quantification() (hyperspy._signals.eds_tem.EDSTEMSpectrum method)

quantification_cliff_lorimer() (in module hyperspy.misc.eds.utils) quantification_cross_section() (in module hyperspy.misc.eds.utils) quantification_zeta_factor() (in module hyperspy.misc.eds.utils) quantify() (hyperspy.models.eelsmodel.EELSModel method)

R

radii (hyperspy.samfire_utils.strategy.LocalStrategy property) random_state (hyperspy.samfire.Samfire attribute) RangeWidget (class in hyperspy.drawing._widgets.range) RC (class in hyperspy._components.rc) read() (hyperspy.io_plugins._hierarchical.HierarchicalReader method) read_array() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_boolean() (in module hyperspy.misc.io.utils_readfile) read_byte() (in module hyperspy.misc.io.utils_readfile) read_char() (in module hyperspy.misc.io.utils_readfile) read_double() (in module hyperspy.misc.io.utils_readfile) read_emd_version() (in module hyperspy.io_plugins.emd) read_file() (hyperspy.io_plugins.emd.EMD_NCEM method) read_float() (in module hyperspy.misc.io.utils_readfile) read_long() (in module hyperspy.misc.io.utils_readfile) read_long_long() (in module hyperspy.misc.io.utils_readfile) read_metadata_from_file() (in module hyperspy.io_plugins.nexus) read_piece() (hyperspy.io_plugins.bruker.SFSTreeItem method) read_raw() (in module hyperspy.io_plugins.ripple) read_short() (in module hyperspy.misc.io.utils_readfile) read_simple_data() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_string() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_struct() (hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader method) read_ulong() (in module hyperspy.misc.io.utils_readfile) read_ulong_long() (in module hyperspy.misc.io.utils_readfile) read_ushort() (in module hyperspy.misc.io.utils_readfile) readgosfile() (hyperspy.misc.eels.hartree_slater_gos.HartreeSlaterGOS method) readLELong() (in module hyperspy.io_plugins.fei) readLELongLong() (in module hyperspy.io_plugins.fei) readLEShort() (in module hyperspy.io_plugins.fei) real (hyperspy._signals.complex_signal.ComplexSignal property) rebin() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method) (in module hyperspy.misc.array_tools) rechunk() (hyperspy._signals.lazy.LazySignal method) reconstruct() (in module hyperspy.misc.holography.reconstruct) reconstruct_object() (in module hyperspy.misc.export_dictionary) reconstruct_phase() (hyperspy._signals.hologram_image.HologramImage method) Rectangle (class in hyperspy.drawing._markers.rectangle) RectangleWidget (class in hyperspy.drawing._widgets.rectangles) RectangularROI (class in hyperspy.roi) red_chisq (hyperspy.model.BaseModel property) (hyperspy.models.model1d.Model1D attribute) (hyperspy.models.model2d.Model2D attribute)

ReducedChiSquaredStrategy (class in hyperspy.samfire_utils.local_strategies) refresh() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) refresh_database() (hyperspy.samfire.Samfire method) remove() (hyperspy.axes.AxesManager method) (hyperspy.model.BaseModel method) (hyperspy.models.edsmodel.EDSModel method) (hyperspy.models.eelsmodel.EELSModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.models.model2d.Model2D method) (hyperspy.samfire.Samfire method) (hyperspy.samfire.StrategyList method) (hyperspy.samfire_utils.strategy.SamfireStrategy method) (hyperspy.signal.ModelManager method) remove_background() (hyperspy._signals.signal1d.Signal1D method) remove_fine_structure_data() (hyperspy.models.eelsmodel.EELSModel method) remove_signal_range() (hyperspy.models.model1d.Model1D method) remove_widget() (hyperspy.roi.BaseInteractiveROI method) remove_xray_lines_markers() (hyperspy._signals.eds.EDSSpectrum method) replace_html_symbols() (in module hyperspy.misc.utils) reset_signal_range() (hyperspy.models.model1d.Model1D method) ResizableDraggableWidgetBase (class in hyperspy.drawing.widget) resize_color (hyperspy.drawing.widget.ResizersMixin attribute) resize_pixel_size (hyperspy.drawing.widget.ResizersMixin attribute) resizer_picked (hyperspy.drawing.widget.ResizersMixin attribute) resizers (hyperspy.drawing.widget.ResizersMixin attribute) ResizersMixin (class in hyperspy.drawing.widget) resolve_fine_structure() (hyperspy.models.eelsmodel.EELSModel method) restore() (hyperspy.signal.ModelManager method) resume_auto_fine_structure_width() (hyperspy.models.eelsmodel.EELSModel method) reverse_bss_component() (hyperspy.learn.mva.MVA method) reverse_decomposition_component() (hyperspy.learn.mva.MVA method) rgbx2regular_array() (in module hyperspy.misc.rgb_tools) richardson_lucy_deconvolution() (hyperspy._signals.eels.EELSSpectrum method) right_pointer_on (hyperspy.drawing.mpl_hse.MPL_HyperSignal1D_Explorer property) rollaxis() (hyperspy.signal.BaseSignal method) rollelem() (in module hyperspy.misc.utils) rotation_angle_wrapped (hyperspy._components.gaussian2d.Gaussian2D property) rotation_major_axis (hyperspy._components.gaussian2d.Gaussian2D property) round_half_away_from_zero() (in module hyperspy.misc.array_tools) round_half_towards_zero() (in module hyperspy.misc.array_tools) rpca_godec() (in module hyperspy.learn.rpca) run() (hyperspy.samfire_utils.samfire_pool.SamfirePool method)

S

samf (hyperspy.samfire_utils.strategy.LocalStrategy property) Samfire (class in hyperspy.samfire) SamfirePool (class in hyperspy.samfire_utils.samfire_pool) SamfireStrategy (class in hyperspy.samfire_utils.strategy) sample (hyperspy.io_plugins.emd.EMD attribute) sarray2dict() (in module hyperspy.misc.array_tools) save() (hyperspy.learn.mva.LearningResults method) (hyperspy.model.BaseModel method) (hyperspy.signal.BaseSignal method) (in module hyperspy.io) save_every (hyperspy.samfire.Samfire attribute) save_parameters2file() (hyperspy.model.BaseModel method) save_to_emd() (hyperspy.io_plugins.emd.EMD method) save_to_unf() (hyperspy.io_plugins.semper_unf.SemperFormat method) ScalableFixedPattern (class in hyperspy._components.scalable_fixed_pattern) scales (hyperspy.io_plugins.semper_unf.SemperFormat attribute) SEE (class in hyperspy._components.pes_see) select() (hyperspy.drawing.widget.WidgetBase method) SemperFormat (class in hyperspy.io_plugins.semper_unf) ser_reader() (in module hyperspy.io_plugins.fei) serial_date_to_datetime() (in module hyperspy.misc.date_time_tools) serial_date_to_ISO_format() (in module hyperspy.misc.date_time_tools) set_all_edges_intensities_positive() (hyperspy.models.eelsmodel.EELSModel method) set_axis() (hyperspy.axes.AxesManager method) set_bounds() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) set_component_active_value() (hyperspy.model.BaseModel method) set_convolution_axis() (hyperspy.models.model1d.Model1D method) set_current_values_to() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) set_data() (hyperspy.drawing.marker.MarkerBase method) set_elements() (hyperspy._signals.eds.EDSSpectrum method) set_ibounds() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing._widgets.rectangles.RectangleWidget method) set_item() (hyperspy.misc.utils.DictionaryTreeBrowser method) set_line_properties() (hyperspy.drawing.signal1d.Signal1DLine method) set_lines() (hyperspy._signals.eds.EDSSpectrum method) set_log_level() (in module hyperspy.logger) set_marker_properties() (hyperspy.drawing.marker.MarkerBase method) set_microscope_parameters() (hyperspy._components.eels_cl_edge.EELSCLEdge method) (hyperspy._signals.eds_sem.EDSSEMSpectrum method) (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.hologram_image.HologramImage method) set_mpl_ax() (hyperspy.drawing.widget.WidgetBase method) set_noise_variance() (hyperspy.signal.BaseSignal method) set_on() (hyperspy.drawing._widgets.range.RangeWidget method) (hyperspy.drawing.widget.ResizersMixin method) (hyperspy.drawing.widget.WidgetBase method) set_parameters_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_not_free() (hyperspy.component.Component method) (hyperspy.model.BaseModel method) set_parameters_value() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) set_signal_dimension() (hyperspy.axes.AxesManager method) set_signal_origin() (hyperspy.signal.BaseSignal method) set_signal_range() (hyperspy.models.model1d.Model1D method) set_signal_type() (hyperspy.signal.BaseSignal method) set_size_in_indices() (hyperspy.drawing.widget.ResizableDraggableWidgetBase method) set_xaxis_lims() (in module hyperspy.drawing.utils) setup() (hyperspy.utils.parallel_pool.ParallelPool method) setup_compression_metadata() (hyperspy.io_plugins.bruker.SFSTreeItem method) SFS_reader (class in hyperspy.io_plugins.bruker) SFSTreeItem (class in hyperspy.io_plugins.bruker) ShapeError shift1D() (hyperspy._signals.signal1d.Signal1D method) sigma (hyperspy._components.gaussianhf.GaussianHF attribute) sigma_major (hyperspy._components.gaussian2d.Gaussian2D property) sigma_minor (hyperspy._components.gaussian2d.Gaussian2D property) signal (hyperspy.model.BaseModel attribute) (hyperspy.models.model1d.Model1D attribute) (hyperspy.models.model2d.Model2D attribute)

Signal1D (class in hyperspy._signals.signal1d) Signal1DCalibration (class in hyperspy.signal_tools) Signal1DFigure (class in hyperspy.drawing.signal1d) Signal1DLine (class in hyperspy.drawing.signal1d) Signal1DRangeSelector (class in hyperspy.signal_tools) Signal2D (class in hyperspy._signals.signal2d) Signal2DCalibration (class in hyperspy.signal_tools) signal_axes (hyperspy.axes.AxesManager property) signal_dimension (hyperspy.axes.AxesManager property) signal_shape (hyperspy.axes.AxesManager property) signal_size (hyperspy.axes.AxesManager property) SignalDimensionError signals (hyperspy.io_plugins.emd.EMD attribute) SignalSizeError simple_decorator() (in module hyperspy.decorators) SimpleMessage (class in hyperspy.signal_tools) skewness (hyperspy._components.skew_normal.SkewNormal property) SkewNormal (class in hyperspy._components.skew_normal) sleep() (hyperspy.utils.parallel_pool.ParallelPool method) slugify() (in module hyperspy.misc.utils) smart_fit() (hyperspy.models.eelsmodel.EELSModel method) smooth_lowess() (hyperspy._signals.signal1d.Signal1D method) smooth_savitzky_golay() (hyperspy._signals.signal1d.Signal1D method) smooth_tv() (hyperspy._signals.signal1d.Signal1D method) Smoothing (class in hyperspy.signal_tools) SmoothingLowess (class in hyperspy.signal_tools) SmoothingSavitzkyGolay (class in hyperspy.signal_tools) SmoothingTV (class in hyperspy.signal_tools) SpanROI (class in hyperspy.roi) SpanSelectorInSignal1D (class in hyperspy.signal_tools) spc_reader() (in module hyperspy.io_plugins.edax) spd_reader() (in module hyperspy.io_plugins.edax) SpectrumLabelPosition (class in hyperspy.misc.label_position) spikes_diagnosis() (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.signal1d.Signal1D method) spikes_removal_tool() (hyperspy._signals.eels.EELSSpectrum method) (hyperspy._signals.signal1d.Signal1D method) SpikesRemovalInteractive (class in hyperspy.signal_tools) split() (hyperspy.signal.BaseSignal method) SplitVoigt (class in hyperspy._components.split_voigt) SquareWidget (class in hyperspy.drawing._widgets.rectangles) squeeze() (hyperspy.signal.BaseSignal method) stack() (in module hyperspy.misc.utils) start() (hyperspy.samfire.Samfire method) statistics() (hyperspy._signals.hologram_image.HologramImage method) std() (hyperspy.signal.BaseSignal method) stop() (hyperspy.samfire.Samfire method) (hyperspy.samfire_utils.samfire_pool.SamfirePool method) store() (hyperspy.model.BaseModel method) (hyperspy.signal.ModelManager method) store_current_value_in_array() (hyperspy.component.Parameter method) store_current_values() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) str2num() (in module hyperspy.misc.utils) strategies (hyperspy.samfire.Samfire attribute) StrategyList (class in hyperspy.samfire) stream_to_array() (hyperspy.io_plugins.emd.FeiSpectrumStream method) (in module hyperspy.misc.io.fei_stream_readers) stream_to_sparse_array() (hyperspy.io_plugins.emd.FeiSpectrumStream method) stream_to_sparse_COO_array() (in module hyperspy.misc.io.fei_stream_readers) subplot_parameters() (in module hyperspy.drawing.utils) sum() (hyperspy._signals.eds.EDSSpectrum method) (hyperspy.signal.BaseSignal method) summary() (hyperspy.learn.mva.LearningResults method) suppress() (hyperspy.events.Events method) (hyperspy.events.EventSuppressor method) suspend_auto_fine_structure_width() (hyperspy.models.eelsmodel.EELSModel method) suspend_update() (hyperspy.model.BaseModel method) svd_flip_signs() (in module hyperspy.learn.svd_pca) svd_pca() (in module hyperspy.learn.svd_pca) svd_solve() (in module hyperspy.learn.svd_pca) swap_axes() (hyperspy.signal.BaseSignal method) swapelem() (in module hyperspy.misc.utils) switch_iterpath() (hyperspy.axes.AxesManager method)

T

T (hyperspy.signal.BaseSignal property) take_off_angle() (in module hyperspy.misc.eds.utils) Text (class in hyperspy.drawing._markers.text) timeout (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) timestep (hyperspy.samfire_utils.samfire_pool.SamfirePool attribute) (hyperspy.utils.parallel_pool.ParallelPool attribute) title (hyperspy.io_plugins.semper_unf.SemperFormat attribute) to_array() (in module hyperspy._signals.lazy) to_device() (hyperspy.signal.BaseSignal method) to_host() (hyperspy.signal.BaseSignal method) to_numpy() (in module hyperspy.misc.utils) to_signal() (hyperspy.io_plugins.semper_unf.SemperFormat method)

to_signal1D() (hyperspy._signals.common_signal2d.CommonSignal2D method) to_signal2D() (hyperspy._signals.common_signal1d.CommonSignal1D method) transpose() (hyperspy.signal.BaseSignal method) (in module hyperspy.misc.utils) triu_indices_minus_diag() (in module hyperspy._signals.signal2d) tv_denoise() (in module hyperspy.misc.tv_denoise) twin (hyperspy.component.Parameter attribute) twin_function (hyperspy.component.Parameter attribute) twin_function_expr (hyperspy.component.Parameter attribute) twin_inverse_function (hyperspy.component.Parameter attribute) twin_inverse_function_expr (hyperspy.component.Parameter attribute) two_area_background_estimation() (hyperspy.models.eelsmodel.EELSModel method) type (hyperspy.drawing.signal1d.Signal1DLine attribute)

U

underline() (in module hyperspy.misc.utils) undo_treatments() (hyperspy.learn.mva.MVA method) unfold() (hyperspy.signal.BaseSignal method) unfold_navigation_space() (hyperspy.signal.BaseSignal method) unfold_signal_space() (hyperspy.signal.BaseSignal method) unfolded() (hyperspy.signal.BaseSignal method) UniformDataAxis (class in hyperspy.axes) unit_vector() (in module hyperspy.drawing._widgets.line2d) units (hyperspy.io_plugins.semper_unf.SemperFormat attribute) unpack_from_intbytes() (in module hyperspy.io_plugins.semper_unf) unset_all_edges_intensities_positive() (hyperspy.models.eelsmodel.EELSModel method) unwrapped_phase() (hyperspy._signals.complex_signal.ComplexSignal method) update() (hyperspy.drawing.signal1d.Signal1DFigure method) (hyperspy.drawing.signal1d.Signal1DLine method) (hyperspy.roi.BaseInteractiveROI method) (hyperspy.roi.BaseROI method) (hyperspy.samfire.Samfire method) (hyperspy.samfire_utils.segmenters.histogram.HistogramSegmenter method) (hyperspy.samfire_utils.strategy.SamfireStrategy method)

update_axes_attributes_from() (hyperspy.axes.AxesManager method) update_axis() (hyperspy.axes.DataAxis method) update_date_time_in_metadata() (in module hyperspy.misc.date_time_tools) update_every (hyperspy.samfire.Samfire attribute) update_from() (hyperspy.axes.BaseDataAxis method) (hyperspy.axes.DataAxis method) (hyperspy.axes.FunctionalDataAxis method) (hyperspy.axes.UniformDataAxis method) update_parameters() (hyperspy.samfire_utils.samfire_pool.SamfirePool method) update_plot() (hyperspy.model.BaseModel method) (hyperspy.models.model1d.Model1D method) (hyperspy.signal.BaseSignal method) user (hyperspy.io_plugins.emd.EMD attribute)

V

vacuum_mask() (hyperspy._signals.eds_tem.EDSTEMSpectrum method) (hyperspy._signals.eels.EELSSpectrum method) validate() (hyperspy.component.NoneFloat method) value (hyperspy.axes.AxesManager attribute) (hyperspy.component.Parameter attribute) value2index() (hyperspy.axes.BaseDataAxis method) (hyperspy.axes.UniformDataAxis method) value_range_to_indices() (hyperspy.axes.BaseDataAxis method) valuemax() (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method) valuemin() (hyperspy._signals.lazy.LazySignal method) (hyperspy.signal.BaseSignal method)

values() (hyperspy.samfire_utils.strategy.GlobalStrategy method) (hyperspy.samfire_utils.strategy.LocalStrategy method) var() (hyperspy.signal.BaseSignal method) variance (hyperspy._components.skew_normal.SkewNormal property) VerticalLine (class in hyperspy.drawing._markers.vertical_line) VerticalLineSegment (class in hyperspy.drawing._markers.vertical_line_segment) VerticalLineWidget (class in hyperspy.drawing._widgets.vertical_line) Vignetting (class in hyperspy._components.eels_vignetting) VisibleDeprecationWarning Voigt (class in hyperspy._components.pes_voigt) (class in hyperspy._components.voigt) voigt() (in module hyperspy._components.pes_voigt) VolumePlasmonDrude (class in hyperspy._components.volume_plasmon_drude)

W

weight (hyperspy.samfire_utils.strategy.LocalStrategy property) weight_to_atomic() (in module hyperspy.misc.material) whiten_data() (in module hyperspy.learn.whitening) Widget1DBase (class in hyperspy.drawing.widget) Widget2DBase (class in hyperspy.drawing.widget) WidgetBase (class in hyperspy.drawing.widget)

width (hyperspy.roi.RectangularROI property) workers (hyperspy.samfire.Samfire attribute) write_file() (hyperspy.io_plugins.emd.EMD_NCEM method) write_raw() (in module hyperspy.io_plugins.ripple) write_signal() (hyperspy.io_plugins._hierarchical.HierarchicalWriter method) WrongObjectError

X

x (hyperspy.roi.RectangularROI property)

xray_lines_model() (in module hyperspy.misc.eds.utils) xray_range() (in module hyperspy.misc.eds.utils)

Y

y (hyperspy.roi.RectangularROI property)

Z

zeta_to_edx_cross_section() (in module hyperspy.misc.eds.utils)

ZspyReader (class in hyperspy.io_plugins.zspy) ZspyWriter (class in hyperspy.io_plugins.zspy)